Hybridization and emergence of virulence in opportunistic human yeast pathogens

Genomic innovation for crop improvement

(2017) Michael W. Bevan et al.   NATURE

Novel brewing yeast hybrids: creation and application

(2016) Kristoffer Krogerus et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Interspecific hybridization impacts host range and pathogenicity of filamentous microbes

(2016) Jasper RL Depotter et al.   CURRENT OPINION IN MICROBIOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Genome evolution in the allotetraploid frog Xenopus laevis

(2016) Adam M. Session et al.   NATURE

Evolution by gene loss

(2016) Ricard Albalat et al.   NATURE REVIEWS GENETICS

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Ploidy dynamics and evolvability in fungi

(2016) Noa Blutraich Wertheimer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species

(2016) Markus S. Schröder et al.   PLoS Genetics

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

(2016) Jean-Baptiste Leducq et al.   Nature Microbiology

Cryptococcosis in solid organ transplant recipients

(2015) Andrés F. Henao-Martínez et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex

(2015) Ferry Hagen et al.   FUNGAL GENETICS AND BIOLOGY

Cryptococcosis due to Cryptococcus gattii in Germany from 2004–2013

(2015) Ilka McCormick Smith et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Coccidioides Species Determination: Does Sequence Analysis Agree with Restriction Fragment Length Polymorphism?

(2015) Suzanne M. Johnson et al.   MYCOPATHOLOGIA

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage

(2015) Marina Marcet-Houben et al.   PLOS BIOLOGY

Origin of the Yeast Whole-Genome Duplication

(2015) Kenneth H. Wolfe   PLOS BIOLOGY

Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin

(2015) Guangxi Wu et al.   PLoS Genetics

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

(2015) Leszek P. Pryszcz et al.   PLoS Genetics

Back to the wilds: Tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives

(2014) Emily Warschefsky et al.   AMERICAN JOURNAL OF BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Clonality, recombination, and hybridization in the plumbing-inhabiting human pathogen Fusarium keratoplasticum inferred from multilocus sequence typing

(2014) Dylan PG Short et al.   BMC EVOLUTIONARY BIOLOGY

Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies

(2014) Leszek P. Pryszcz et al.   Genome Biology and Evolution

Differential retention and divergent resolution of duplicate genes following whole-genome duplication

(2014) Casey L. McGrath et al.   GENOME RESEARCH

Antifungal susceptibilities of Candida glabrata species complex, Candida krusei, Candida parapsilosis species complex and Candida tropicalis causing invasive candidiasis in China: 3 year national surveillance

(2014) Meng Xiao et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A phylogenomics approach for selecting robust sets of phylogenetic markers

(2014) Salvador Capella-Gutierrez et al.   NUCLEIC ACIDS RESEARCH

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

(2014) Guilhem Janbon et al.   PLoS Genetics

The complex hybrid origins of the root knot nematodes revealed through comparative genomics

(2014) David H. Lunt et al.   PeerJ

Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.

(2013) Dylan P.G. Short et al.   FUNGAL GENETICS AND BIOLOGY

Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis

(2013) Leszek P. Pryszcz et al.   Genome Biology and Evolution

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

(2013) Pierre Gladieux et al.   MOLECULAR ECOLOGY

Genomic and epigenetic insights into the molecular bases of heterosis

(2013) Z. Jeffrey Chen   NATURE REVIEWS GENETICS

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

(2013) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Candida parapsilosis Is a Significant Neonatal Pathogen

(2013) Mohan Pammi et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae

(2013) Y. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emerging and Emerged Pathogenic Candida Species: Beyond the Candida albicans Paradigm

(2013) Nicolas Papon et al.   PLoS Pathogens

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

(2012) Mauricio O Carneiro et al.   BMC GENOMICS

The changing epidemiology of healthcare-associated candidemia over three decades

(2012) Daniel Diekema et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Candida parapsilosisand the neonate: epidemiology, virulence and host defense in a unique patient setting

(2012) Brian DW Chow et al.   Expert Review of Anti-Infective Therapy

Evolutionary Role of Interspecies Hybridization and Genetic Exchanges in Yeasts

(2012) Lucia Morales et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis

(2012) Alessandro Riccombeni et al.   PLoS One

Comparison and Temporal Trends of Three Groups with Cryptococcosis: HIV-Infected, Solid Organ Transplant, and HIV-Negative/Non-Transplant

(2012) Emily W. Bratton et al.   PLoS One

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species

(2012) E. H. Stukenbrock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hidden Killers: Human Fungal Infections

(2012) G. D. Brown et al.   Science Translational Medicine

Genetic Diversity and Genomic Plasticity of Cryptococcus neoformans AD Hybrid Strains

(2012) Wenjun Li et al.   G3-Genes Genomes Genetics

Pichia sorbitophila , an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

(2012) Véronique Leh Louis et al.   G3-Genes Genomes Genetics

Prospective Multicenter Study of the Epidemiology, Molecular Identification, and Antifungal Susceptibility of Candida parapsilosis, Candida orthopsilosis, and Candida metapsilosis Isolated from Patients with Candidemia

(2011) Emilia Cantón et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evolution of Mating within the Candida parapsilosis Species Group

(2011) Sixiang Sai et al.   EUKARYOTIC CELL

Identification of Novel Hybrids Between Cryptococcus neoformans var. grubii VNI and Cryptococcus gattii VGII

(2011) Mojgan Aminnejad et al.   MYCOPATHOLOGIA

Genome Variation in Cryptococcus gattii, an Emerging Pathogen of Immunocompetent Hosts

(2011) C. A. D'Souza et al.   mBio

The Outbreak of Cryptococcus gattii in Western North America: Epidemiology and Clinical Issues

(2011) Edmond J. Byrnes et al.   Current Infectious Disease Reports

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

Biofilm production and evaluation of antifungal susceptibility amongst clinicalCandidaspp. isolates, including strains of theCandida parapsilosiscomplex

(2010) Analy S. Melo et al.   MEDICAL MYCOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes

(2010) Edward Sionov et al.   PLoS Pathogens

Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS

(2009) Benjamin J Park et al.   AIDS

Chimeric Genomes of Natural Hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii

(2009) C. Belloch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of biofilms formed by Candida parapsilosis, C. metapsilosis, and C. orthopsilosis

(2009) Ali Abdul Lattif et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Homoploid hybridization in the origin and evolution of wild diploid potato species

(2009) Ricardo W. Masuelli et al.   PLANT SYSTEMATICS AND EVOLUTION

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

(2009) I. Tirosh et al.   SCIENCE

A Naturally Occurring Proline-to-Alanine Amino Acid Change in Fks1p in Candida parapsilosis, Candida orthopsilosis, and Candida metapsilosis Accounts for Reduced Echinocandin Susceptibility

(2008) G. Garcia-Effron et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Candida parapsilosis, an Emerging Fungal Pathogen

(2008) D. Trofa et al.   CLINICAL MICROBIOLOGY REVIEWS

Geographic Distribution and Antifungal Susceptibility of the Newly Described Species Candida orthopsilosis and Candida metapsilosis in Comparison to the Closely Related Species Candida parapsilosis

(2008) S. R. Lockhart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Molecular Phylogenetic Diversity, Multilocus Haplotype Nomenclature, and In Vitro Antifungal Resistance within the Fusarium solani Species Complex

(2008) K. O'Donnell et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metabolic adaptation inCryptococcus neoformansduring early murine pulmonary infection

(2008) Guanggan Hu et al.   MOLECULAR MICROBIOLOGY