Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis

Thriving within the host: Candida spp. interactions with phagocytic cells

(2013) Pedro Miramón et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

DELLY: structural variant discovery by integrated paired-end and split-read analysis

(2012) T. Rausch et al.   BIOINFORMATICS

Mitochondrial genome variability within the Candida parapsilosis species complex

(2012) Matus Valach et al.   MITOCHONDRION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Sequence and Analysis of the Genome of the Pathogenic Yeast Candida orthopsilosis

(2012) Alessandro Riccombeni et al.   PLoS One

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

(2011) Alessandro Guida et al.   BMC GENOMICS

Evolution of Mating within the Candida parapsilosis Species Group

(2011) Sixiang Sai et al.   EUKARYOTIC CELL

Candiduria in catheterized intensive care unit patients : Emerging microbiological trends

(2011) Manisha Jain et al.   Indian Journal of Pathology and Microbiology

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

CandidaBloodstream Infections: Comparison of Species Distributions and Antifungal Resistance Patterns in Community-Onset and Nosocomial Isolates in the SENTRY Antimicrobial Surveillance Program, 2008-2009

(2010) Michael A. Pfaller et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

(2010) Valentina Boeva et al.   BIOINFORMATICS

Genotypic and phenotypic properties of Candida parapsilosis sensu strictu strains isolated from different geographic regions and body sites

(2010) Arianna Tavanti et al.   BMC MICROBIOLOGY

Candidemia in children

(2010) Theoklis Zaoutis   CURRENT MEDICAL RESEARCH AND OPINION

Screening for amino acid substitutions in the Candida albicans Erg11 protein of azole-susceptible and azole-resistant clinical isolates: new substitutions and a review of the literature

(2010) Florent Morio et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

(2010) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

(2010) J. Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Virulence Attenuation of Candida albicans Genetic Variants Isolated from a Patient with a Recurrent Bloodstream Infection

(2010) Paula Sampaio et al.   PLoS One

Candida parapsilosis: a review of its epidemiology, pathogenesis, clinical aspects, typing and antimicrobial susceptibility

(2009) Eveline C. van Asbeck et al.   CRITICAL REVIEWS IN MICROBIOLOGY

AFLP genotyping of Candida metapsilosis clinical isolates: Evidence for recombination

(2009) Lambert A.M. Hensgens et al.   FUNGAL GENETICS AND BIOLOGY

Sensitive and accurate detection of copy number variants using read depth of coverage

(2009) S. Yoon et al.   GENOME RESEARCH

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

(2009) A. P. Jackson et al.   GENOME RESEARCH

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis

(2008) David A Fitzpatrick et al.   BMC EVOLUTIONARY BIOLOGY

Candida parapsilosis, an Emerging Fungal Pathogen

(2008) D. Trofa et al.   CLINICAL MICROBIOLOGY REVIEWS

Discovering the secrets of theCandida albicansagglutinin-like sequence (ALS) gene family – a sticky pursuit

(2008) Lois L. Hoyer et al.   MEDICAL MYCOLOGY