Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action

Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA

(2020) Vincent Boivin et al.   NUCLEIC ACIDS RESEARCH

The cellular landscape of mid-size noncoding RNA

(2019) Vincent Boivin et al.   Wiley Interdisciplinary Reviews-RNA

Small non-coding RNA within the endogenous spliceosome and alternative splicing regulation

(2019) Ruth Sperling   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Cooperative 2′-O-methylation of the wobble cytidine of human elongator tRNAMet(CAT) by a nucleolar and a Cajal body-specific box C/D RNP

(2019) Patrice Vitali et al.   GENES & DEVELOPMENT

Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21

(2019) Dae-Seok Kim et al.   MOLECULAR CELL

Modification of messenger RNA by 2′-O-methylation regulates gene expression in vivo

(2019) Brittany A. Elliott et al.   Nature Communications

snoDB: an interactive database of human snoRNA sequences, abundance and interactions

(2019) Philia Bouchard-Bourelle et al.   NUCLEIC ACIDS RESEARCH

Functional diversity of small nucleolar RNAs

(2019) Tomaž Bratkovič et al.   NUCLEIC ACIDS RESEARCH

Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

(2018) Vincent Boivin et al.   RNA

Neuronal differentiation induces SNORD115 expression and is accompanied by post-transcriptional changes of serotonin receptor 2c mRNA

(2018) Tomaž Bratkovič et al.   Scientific Reports

Processing and roles of snoRNA-ended long noncoding RNAs

(2018) Yu-Hang Xing et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Box C/D snoRNP Autoregulation by a cis-Acting snoRNA in the NOP56 Pre-mRNA

(2018) Søren Lykke-Andersen et al.   MOLECULAR CELL

RNA-Seq employing a novel rRNA depletion strategy reveals a rich repertoire of snoRNAs in Euglena gracilis including box C/D and Ψ-guide RNAs targeting the modification of rRNA extremities.

(2018) Ashley N. Moore et al.   RNA Biology

RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions

(2018) Lilia Ayadi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PARP inhibitors: Clinical utility and possibilities of overcoming resistance

(2017) Benjamin G. Bitler et al.   GYNECOLOGIC ONCOLOGY

Nm-seq maps 2′-O-methylation sites in human mRNA with base precision

(2017) Qing Dai et al.   NATURE METHODS

A snoRNA modulates mRNA 3′ end processing and regulates the expression of a subset of mRNAs

(2017) Chunliu Huang et al.   NUCLEIC ACIDS RESEARCH

The fungal snoRNAome

(2017) Sebastian Canzler et al.   RNA

Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation

(2017) Sunny Sharma et al.   PLoS Genetics

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

(2016) João Victor de Araujo Oliveira et al.   BMC BIOINFORMATICS

RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

(2016) Zhipeng Lu et al.   CELL

Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins

(2016) Huang Wu et al.   MOLECULAR CELL

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

(2016) Jong Ghut Ashley Aw et al.   MOLECULAR CELL

Global Mapping of Human RNA-RNA Interactions

(2016) Eesha Sharma et al.   MOLECULAR CELL

An updated human snoRNAome

(2016) Hadi Jorjani et al.   NUCLEIC ACIDS RESEARCH

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing

(2016) Marina Falaleeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA modification in Cajal bodies

(2016) U. Thomas Meier   RNA Biology

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

(2016) Ryan M. Nottingham et al.   RNA

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer

(2015) Zurab Siprashvili et al.   NATURE GENETICS

An Lnc RNA (GAS5)/SnoRNA-derived piRNA induces activation of TRAIL gene by site-specifically recruiting MLL/COMPASS-like complexes

(2015) Xin He et al.   NUCLEIC ACIDS RESEARCH

The emerging landscape of small nucleolar RNAs in cell biology

(2015) Fabien Dupuis-Sandoval et al.   Wiley Interdisciplinary Reviews-RNA

GRASP: Guided Reference-based Assembly of Short Peptides

(2014) Cuncong Zhong et al.   NUCLEIC ACIDS RESEARCH

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

(2014) Gabrielle Deschamps-Francoeur et al.   NUCLEIC ACIDS RESEARCH

Matching of Soulmates: Coevolution of snoRNAs and Their Targets

(2013) S. Kehr et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

(2013) Shivendra Kishore et al.   GENOME BIOLOGY

Human intron-encoded Alu RNAs are processed and packaged into Wdr79-associated nucleoplasmic box H/ACA RNPs

(2012) B. E. Jady et al.   GENES & DEVELOPMENT

Df31 Protein and snoRNAs Maintain Accessible Higher-Order Structures of Chromatin

(2012) Thomas Schubert et al.   MOLECULAR CELL

Long Noncoding RNAs with snoRNA Ends

(2012) Qing-Fei Yin et al.   MOLECULAR CELL

Human box C/D snoRNA processing conservation across multiple cell types

(2011) Michelle S. Scott et al.   NUCLEIC ACIDS RESEARCH

Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori

(2011) Dandan Li et al.   NUCLEIC ACIDS RESEARCH

Analysis of Human Small Nucleolar RNAs (snoRNA) and the Development of snoRNA Modulator of Gene Expression Vectors

(2010) Motoharu Ono et al.   MOLECULAR BIOLOGY OF THE CELL

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes

(2008) Inna Myslyuk et al.   BMC BIOINFORMATICS

Retroposed SNOfall--A mammalian-wide comparison of platypus snoRNAs

(2008) J. Schmitz et al.   GENOME RESEARCH

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

(2008) Christoph Jöchl et al.   NUCLEIC ACIDS RESEARCH