Single-cell connectomic analysis of adult mammalian lungs

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Epac agonist improves barrier function in iPSC-derived endothelial colony forming cells for whole organ tissue engineering

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Circuit Design Features of a Stable Two-Cell System

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart

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Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis

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zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

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A single-cell survey of the small intestinal epithelium

(2017) Adam L. Haber et al.   NATURE

A molecular census of arcuate hypothalamus and median eminence cell types

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In Vitro Models to Study Human Lung Development, Disease and Homeostasis

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Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

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Making Connections: Guidance Cues and Receptors at Nonneural Cell–Cell Junctions

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Extracting Intercellular Signaling Network of Cancer Tissues using Ligand-Receptor Expression Patterns from Whole-tumor and Single-cell Transcriptomes

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Slit-Robo signaling

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Sema3d controls collective endothelial cell migration by distinct mechanisms via Nrp1 and PlxnD1

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The role of the local environment and epigenetics in shaping macrophage identity and their effect on tissue homeostasis

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Tissue biology perspective on macrophages

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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

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Respiratory epithelial cells orchestrate pulmonary innate immunity

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Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

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Tissue-based map of the human proteome

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A draft network of ligand–receptor-mediated multicellular signalling in human

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Lung fibroblasts accelerate wound closure in human alveolar epithelial cells through hepatocyte growth factor/c-Met signaling

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Semaphorin 3d and Semaphorin 3e Direct Endothelial Motility through Distinct Molecular Signaling Pathways

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Sessile alveolar macrophages communicate with alveolar epithelium to modulate immunity

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Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

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Remodelling the extracellular matrix in development and disease

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An integral program for tissue renewal and regeneration: Wnt signaling and stem cell control

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Graph analysis of the human connectome: Promise, progress, and pitfalls

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STAR: ultrafast universal RNA-seq aligner

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Human cortical connectome reconstruction from diffusion weighted MRI: The effect of tractography algorithm

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Hive plots--rational approach to visualizing networks

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Alveolar Surfactant Homeostasis and the Pathogenesis of Pulmonary Disease

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Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

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Whole-brain anatomical networks: Does the choice of nodes matter?

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Complex network measures of brain connectivity: Uses and interpretations

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Revisiting the Foundations of Network Analysis

(2009) Carter T. Butts   SCIENCE