The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

(2018) Luis M. Rodriguez-R et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A global analysis of gene expression in Fibrobacter succinogenes S85 grown on cellulose and soluble sugars at different growth rates

(2018) Anthony P. Neumann et al.   Biotechnology for Biofuels

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii

(2017) Indrani Mukhopadhya et al.   ENVIRONMENTAL MICROBIOLOGY

Fibrobacter communities in the gastrointestinal tracts of diverse hindgut-fermenting herbivores are distinct from those of the rumen

(2017) Anthony P. Neumann et al.   ENVIRONMENTAL MICROBIOLOGY

Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity

(2017) Emma Ransom-Jones et al.   mSphere

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions

(2017) Vered Israeli-Ruimy et al.   Scientific Reports

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Complexity of theRuminococcus flavefacienscellulosome reflects an expansion in glycan recognition

(2016) Immacolata Venditto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

(2016) Nurdyana Abdul Rahman et al.   Frontiers in Microbiology

Engineering of plant cell walls for enhanced biofuel production

(2015) Dominique Loqué et al.   CURRENT OPINION IN PLANT BIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial species delineation using whole genome sequences

(2015) Neha J. Varghese et al.   NUCLEIC ACIDS RESEARCH

Polysaccharide utilization locus and CAZYme genome repertoires reveal diverse ecological adaptation of Prevotella species

(2015) Tomaž Accetto et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Influence of Substrates on the Surface Characteristics and Membrane Proteome of Fibrobacter succinogenes S85

(2015) Mahendra P. Raut et al.   PLoS One

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85

(2015) Meagan C. Burnet et al.   PLoS One

Cellulolytic Streptomyces Strains Associated with Herbivorous Insects Share a Phylogenetically Linked Capacity To Degrade Lignocellulose

(2014) Adam J. Book et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis

(2014) Melissa R Christopherson et al.   BMC GENOMICS

Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs

(2014) Emma Ransom-Jones et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

A phylogenetic analysis of the phylum Fibrobacteres

(2013) Kelsea A. Jewell et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist

(2011) Garret Suen et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Influence of the Composition of the Cellulolytic Flora on the Development of Hydrogenotrophic Microorganisms, Hydrogen Utilization, and Methane Production in the Rumens of Gnotobiotically Reared Lambs

(2010) F. Chaucheyras-Durand et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes

(2010) Phillip Brumm et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

(2010) C. L. Hemme et al.   JOURNAL OF BACTERIOLOGY

Evidence for a novel mechanism of microbial cellulose degradation

(2009) David B. Wilson   CELLULOSE

Fibrolytic capabilities of ruminal bacteriumFibrobacter succinogenesin relation to its phylogenetic grouping

(2009) Takumi Shinkai et al.   FEMS MICROBIOLOGY LETTERS

Cel9D, an Atypical 1,4- -D-Glucan Glucohydrolase from Fibrobacter succinogenes: Characteristics, Catalytic Residues, and Synergistic Interactions with Other Cellulases

(2008) M. Qi et al.   JOURNAL OF BACTERIOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE