Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut

Rampant Host Switching Shaped the Termite Gut Microbiome

(2018) Thomas Bourguignon et al.   CURRENT BIOLOGY

Host-Symbiont Cospeciation of Termite-Gut Cellulolytic Protists of the Genera Teranympha and Eucomonympha and their Treponema Endosymbionts

(2018) Satoko Noda et al.   MICROBES AND ENVIRONMENTS

Phylogenetic Diversity and Single-Cell Genome Analysis of “Melainabacteria”, a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut

(2018) Yuniar Devi Utami et al.   MICROBES AND ENVIRONMENTS

Bacterial adhesion at the single-cell level

(2018) Cecile Berne et al.   NATURE REVIEWS MICROBIOLOGY

The importance of designating type material for uncultured taxa

(2018) Maria Chuvochina et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community

(2018) Chinmay V. Tikhe et al.   Frontiers in Microbiology

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

(2018) Alexander J. Probst et al.   Nature Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Bacterial Microbiota Associated with the Glacier Ice Worm Is Dominated by Both Worm-Specific and Glacier-Derived Facultative Lineages

(2017) Takumi Murakami et al.   MICROBES AND ENVIRONMENTS

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut

(2017) Ajeng K. Pramono et al.   MICROBES AND ENVIRONMENTS

Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites

(2017) Kazuki Izawa et al.   Environmental Microbiology Reports

Comparison of Intracellular “Ca.Endomicrobium Trichonymphae” Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA

(2016) Kazuki Izawa et al.   Genome Biology and Evolution

Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut

(2016) Hirokazu Kuwahara et al.   ISME Journal

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

(2016) Nurdyana Abdul Rahman et al.   Frontiers in Microbiology

Biomimetic antimicrobial cloak by graphene-oxide agar hydrogel

(2016) Massimiliano Papi et al.   Scientific Reports

The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution

(2015) Andreas Brune et al.   Annual Review of Microbiology

Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose

(2015) Masahiro Yuki et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Restriction-Modification Systems as Mobile Genetic Elements in the Evolution of an Intracellular Symbiont

(2015) Hao Zheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Acetogenesis from H2plus CO2and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist

(2015) Moriya Ohkuma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classifying the bacterial gut microbiota of termites and cockroaches: A curated phylogenetic reference database (DictDb)

(2015) Aram Mikaelyan et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

The fibre-associated cellulolytic bacterial community in the hindgut of wood-feeding higher termites (Nasutitermesspp.)

(2014) Aram Mikaelyan et al.   ENVIRONMENTAL MICROBIOLOGY

Symbiotic digestion of lignocellulose in termite guts

(2014) Andreas Brune   NATURE REVIEWS MICROBIOLOGY

Complementary symbiont contributions to plant decomposition in a fungus-farming termite

(2014) Michael Poulsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolomic profiling of 13C-labelled cellulose digestion in a lower termite: insights into gut symbiont function

(2014) G. Tokuda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut

(2013) Tomoyuki Sato et al.   ISME Journal

Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites

(2013) Shaomei He et al.   PLoS One

Genome-Wide Effects of Selenium and Translational Uncoupling on Transcription in the Termite Gut Symbiont Treponema primitia

(2013) E. G. Matson et al.   mBio

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat

(2012) J Kirk Harris et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Engineering Escherichia coli Cells for Cellobiose Assimilation through a Phosphorolytic Mechanism

(2011) Ramanan Sekar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Toward the functional analysis of uncultivable, symbiotic microorganisms in the termite gut

(2011) Yuichi Hongoh   CELLULAR AND MOLECULAR LIFE SCIENCES

RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture

(2011) Adam Z Rosenthal et al.   ISME Journal

Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites

(2011) Mahesh S Desai et al.   ISME Journal

Taxonomic and Functional Metagenomic Profiling of the Microbial Community in the Anoxic Sediment of a Sub-saline Shallow Lake (Laguna de Carrizo, Central Spain)

(2011) Manuel Ferrer et al.   MICROBIAL ECOLOGY

Anaerobic Carbon Monoxide Dehydrogenase Diversity in the Homoacetogenic Hindgut Microbial Communities of Lower Termites and the Wood Roach

(2011) Eric G. Matson et al.   PLoS One

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

Genes for selenium dependent and independent formate dehydrogenase in the gut microbial communities of three lower, wood-feeding termites and a wood-feeding roach

(2010) Xinning Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Hydrography shapes bacterial biogeography of the deep Arctic Ocean

(2009) Pierre E Galand et al.   ISME Journal

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell

(2008) Y. Hongoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbioses of flagellates and prokaryotes in the gut of lower termites

(2008) Moriya Ohkuma   TRENDS IN MICROBIOLOGY