A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types

(2019) Gianni Monaco et al.   Cell Reports

Oral corticosteroid exposure and adverse effects in asthmatic patients

(2018) Patrick W. Sullivan et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

(2018) Sanchita Bhattacharya et al.   Scientific Data

Stereotypic Immune System Development in Newborn Children

(2018) Axel Olin et al.   CELL

Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression

(2018) Benjamin J. Schmiedel et al.   CELL

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Chan Zuckerberg Biohub funds first crop of 47 investigators

(2017) Jocelyn Kaiser   SCIENCE

A subcellular map of the human proteome

(2017) Peter J. Thul et al.   SCIENCE

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

(2017) Alexandra-Chloé Villani et al.   SCIENCE

A pathology atlas of the human cancer transcriptome

(2017) Mathias Uhlen et al.   SCIENCE

The Human Cell Atlas

(2017) Aviv Regev et al.   eLife

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

(2017) Hideya Kawaji et al.   Scientific Data

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants

(2016) Ying Jin et al.   NATURE GENETICS

The neXtProt knowledgebase on human proteins: 2017 update

(2016) Pascale Gaudet et al.   NUCLEIC ACIDS RESEARCH

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

High-Resolution CRISPR Screens Reveal Fitness Genes and Genotype-Specific Cancer Liabilities

(2015) Traver Hart et al.   CELL

Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences

(2015) Petter Brodin et al.   CELL

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of essential genes in the human genome

(2015) T. Wang et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

The Role of Mucosal Associated Invariant T Cells in Antimicrobial Immunity

(2015) Ruth J. Napier et al.   Frontiers in Immunology

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Variation in transcriptome size: are we getting the message?

(2014) Jeremy E. Coate et al.   CHROMOSOMA

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

(2014) Fionn Murtagh et al.   JOURNAL OF CLASSIFICATION

Dendritic Cells as Killers: Mechanistic Aspects and Potential Roles

(2014) C. Chauvin et al.   JOURNAL OF IMMUNOLOGY

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Revisiting Global Gene Expression Analysis

(2012) Jakob Lovén et al.   CELL

Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)

(2012) Linn Fagerberg et al.   JOURNAL OF PROTEOME RESEARCH

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

ELIXIR: a distributed infrastructure for European biological data

(2012) Lindsey C. Crosswell et al.   TRENDS IN BIOTECHNOLOGY

Single-cell genomics

(2011) Tomer Kalisky et al.   NATURE METHODS

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

NKp80 defines and stimulates a reactive subset of CD8 T cells

(2008) S. Kuttruff et al.   BLOOD

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS