Into the wild: microbiome transplant studies need broader ecological reality

Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents

(2020) Jens Walter et al.   CELL

Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices

(2019) Brian K. Trevelline et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Emergent climate change impact throughout the world: call for “Microbiome Conservation” before it’s too late

(2019) Aparna Banerjee et al.   BIODIVERSITY AND CONSERVATION

It's what's on the inside that counts: stress physiology and the bacterial microbiome of a wild urban mammal

(2019) Mason R. Stothart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bifidobacteria or Fiber Protects against Diet-Induced Microbiota-Mediated Colonic Mucus Deterioration

(2018) Bjoern O. Schroeder et al.   Cell Host & Microbe

The Transplantation of ω3 PUFA–Altered Gut Microbiota of fat-1 Mice to Wild-Type Littermates Prevents Obesity and Associated Metabolic Disorders

(2018) Célia Bidu et al.   DIABETES

The role of gut microbiota in Clostridium difficile infection

(2018) Michael Samarkos et al.   European Journal of Internal Medicine

Transplantation of human microbiota into conventional mice durably reshapes the gut microbiota

(2018) Laura Wrzosek et al.   Scientific Reports

Impact of beneficial bacteria supplementation on the gut microbiota, colony development and productivity of Apis mellifera L.

(2018) D. Alberoni et al.   Beneficial Microbes

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows

(2018) Shoukun Ji et al.   Frontiers in Cellular and Infection Microbiology

Exogenous Fecal Microbiota Transplantation from Local Adult Pigs to Crossbred Newborn Piglets

(2018) Luansha Hu et al.   Frontiers in Microbiology

Microbiome Structure Influences Infection by the Parasite Crithidia bombi in Bumble Bees

(2018) Blair K. Mockler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology

(2018) Elizabeth Theresa Miller et al.   TRENDS IN ECOLOGY & EVOLUTION

The three regimes of spatial recovery

(2018) Yuval R. Zelnik et al.   ECOLOGY

Transmission modes of the mammalian gut microbiota

(2018) Andrew H. Moeller et al.   SCIENCE

Intestinal microbiota contributes to colonic epithelial changes in simulated microgravity mouse model

(2017) Junxiu Shi et al.   FASEB JOURNAL

Strong responses of Drosophila melanogaster microbiota to developmental temperature

(2017) Neda N. Moghadam et al.   FLY

Manipulation of Gut Microbiota Reveals Shifting Community Structure Shaped by Host Developmental Windows in Amphibian Larvae

(2017) Robin W. Warne et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Host effects on microbiota community assembly

(2017) Kathrin Näpflin et al.   JOURNAL OF ANIMAL ECOLOGY

Gut microbiota of the pine weevil degrades conifer diterpenes and increases insect fitness

(2017) Aileen Berasategui et al.   MOLECULAR ECOLOGY

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Intestinal, extra-intestinal and systemic sequelae of Toxoplasma gondii induced acute ileitis in mice harboring a human gut microbiota

(2017) Eliane von Klitzing et al.   PLoS One

Dispersal limitation promotes the diversification of the mammalian gut microbiota

(2017) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Indoles from commensal bacteria extend healthspan

(2017) Robert Sonowal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caterpillars lack a resident gut microbiome

(2017) Tobin J. Hammer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster

(2017) Berra Erkosar et al.   mBio

Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria

(2017) Emilie Macke et al.   Nature Communications

Regulation of life span by the gut microbiota in the short-lived African turquoise killifish

(2017) Patrick Smith et al.   eLife

The Hologenome Across Environments and the Implications of a Host-Associated Microbial Repertoire

(2017) Tyler J. Carrier et al.   Frontiers in Microbiology

Variable Colonization after Reciprocal Fecal Microbiota Transfer between Mice with Low and High Richness Microbiota

(2017) Aaron C. Ericsson et al.   Frontiers in Microbiology

Handling stress may confound murine gut microbiota studies

(2017) Cary R. Allen-Blevins et al.   PeerJ

Immune Responses to Broad-Spectrum Antibiotic Treatment and Fecal Microbiota Transplantation in Mice

(2017) Ira Ekmekciu et al.   Frontiers in Immunology

Immune system stimulation by the native gut microbiota of honey bees

(2017) Waldan K. Kwong et al.   Royal Society Open Science

Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish

(2017) Victor Schmidt et al.   mSystems

The Induction of Oxalate Metabolism In Vivo Is More Effective with Functional Microbial Communities than with Functional Microbial Species

(2017) Aaron W. Miller et al.   mSystems

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Effect of oral administration of lactic acid bacteria on colony performance and gut microbiota in indoor-reared bumblebees (Bombus terrestris)

(2016) Annelies Billiet et al.   APIDOLOGIE

Beneficial Effects of Fecal Microbiota Transplantation on Ulcerative Colitis in Mice

(2016) Zhihui Tian et al.   DIGESTIVE DISEASES AND SCIENCES

A place for host–microbe symbiosis in the comparative physiologist's toolbox

(2016) Kevin D. Kohl et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

(2016) John R. Kelly et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Effects of Fecal Microbial Transplantation on Microbiome and Immunity in Simian Immunodeficiency Virus-Infected Macaques

(2016) Tiffany Hensley-McBain et al.   JOURNAL OF VIROLOGY

Early gut colonizers shape parasite susceptibility and microbiota composition in honey bee workers

(2016) Ryan S. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

(2016) Antton Alberdi et al.   TRENDS IN ECOLOGY & EVOLUTION

A single gene of a commensal microbe affects host susceptibility to enteric infection

(2016) Mi Young Yoon et al.   Nature Communications

Modeling human enteric dysbiosis and rotavirus immunity in gnotobiotic pigs

(2016) Erica L. Twitchell et al.   Gut Pathogens

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

(2016) Felix Sommer et al.   Cell Reports

Gut microbiota can transfer fiber characteristics and lipid metabolic profiles of skeletal muscle from pigs to germ-free mice

(2016) Honglin Yan et al.   Scientific Reports

Using ecology to inform physiology studies: implications of high population density in the laboratory

(2015) Amy E. M. Newman et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Deterministic Assembly of Complex Bacterial Communities in Guts of Germ-Free Cockroaches

(2015) Aram Mikaelyan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Obese-type Gut Microbiota Induce Neurobehavioral Changes in the Absence of Obesity

(2015) Annadora J. Bruce-Keller et al.   BIOLOGICAL PSYCHIATRY

Gut Microbiota Orchestrates Energy Homeostasis during Cold

(2015) Claire Chevalier et al.   CELL

Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets

(2015) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Probiotic Lactobacillus casei Zhang reduces pro-inflammatory cytokine production and hepatic inflammation in a rat model of acute liver failure

(2015) Yuzhen Wang et al.   EUROPEAN JOURNAL OF NUTRITION

Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemic mice with cachexia

(2015) Laure B Bindels et al.   ISME Journal

Fecal microbiota transplantation and bacterial consortium transplantation have comparable effects on the re-establishment of mucosal barrier function in mice with intestinal dysbiosis

(2015) Ming Li et al.   Frontiers in Microbiology

Rescue of Fructose-Induced Metabolic Syndrome by Antibiotics or Faecal Transplantation in a Rat Model of Obesity

(2015) Blanda Di Luccia et al.   PLoS One

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Nature's microbiome: introduction

(2014) Jacob A. Russell et al.   MOLECULAR ECOLOGY

Microbiology: Microbiome science needs a healthy dose of scepticism

(2014) William P. Hanage   NATURE

Microbiota is essential for social development in the mouse

(2013) L Desbonnet et al.   MOLECULAR PSYCHIATRY

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

(2013) V. K. Ridaura et al.   SCIENCE

Colonizing the Embryonic Zebrafish Gut with Anaerobic Bacteria Derived from the Human Gastrointestinal Tract

(2013) Michael C. Toh et al.   Zebrafish

Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms

(2012) T. Bie et al.   ECOLOGY LETTERS

Gut microbiota instead of host genotype drive the specificity in the interaction of a natural host-parasite system

(2012) Hauke Koch et al.   ECOLOGY LETTERS

Lymphotoxin regulates commensal responses to enable diet-induced obesity

(2012) Vaibhav Upadhyay et al.   NATURE IMMUNOLOGY

Restoring Specific Lactobacilli Levels Decreases Inflammation and Muscle Atrophy Markers in an Acute Leukemia Mouse Model

(2012) Laure B. Bindels et al.   PLoS One

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

Bacterial infection causes stress-induced memory dysfunction in mice

(2010) M. G. Gareau et al.   GUT

Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?

(2010) Y. K. Lee et al.   SCIENCE

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY