Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows

Changes in Intestinal Microbiota Following Combination Therapy with Fecal Microbial Transplantation and Antibiotics for Ulcerative Colitis

(2017) Dai Ishikawa et al.   INFLAMMATORY BOWEL DISEASES

Preparing the Gut with Antibiotics Enhances Gut Microbiota Reprogramming Efficiency by Promoting Xenomicrobiota Colonization

(2017) Shou K. Ji et al.   Frontiers in Microbiology

Comparison of rumen bacteria distribution in original rumen digesta, rumen liquid and solid fractions in lactating Holstein cows

(2017) Shoukun Ji et al.   Journal of Animal Science and Biotechnology

Characterization of the microbial communities along the gastrointestinal tract of sheep by 454 pyrosequencing analysis

(2016) Jin Wang et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Short- and long-term effects of oral vancomycin on the human intestinal microbiota

(2016) Sandrine Isaac et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Effects of antibiotic dry-cow therapy and internal teat sealant on milk somatic cell counts and clinical and subclinical mastitis in early lactation

(2016) H.M. Golder et al.   JOURNAL OF DAIRY SCIENCE

Randomized noninferiority trial comparing 2 commercial intramammary antibiotics for the treatment of nonsevere clinical mastitis in dairy cows

(2016) A.K. Vasquez et al.   JOURNAL OF DAIRY SCIENCE

Access to effective antimicrobials: a worldwide challenge

(2016) Ramanan Laxminarayan et al.   LANCET

Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism

(2016) P Zheng et al.   MOLECULAR PSYCHIATRY

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

Understanding the mechanisms of faecal microbiota transplantation

(2016) Alexander Khoruts et al.   Nature Reviews Gastroenterology & Hepatology

Durable coexistence of donor and recipient strains after fecal microbiota transplantation

(2016) Simone S. Li et al.   SCIENCE

Antibiotic use and its consequences for the normal microbiome

(2016) Martin J. Blaser   SCIENCE

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

(2016) Katri Korpela et al.   Nature Communications

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

(2016) Amy Langdon et al.   Genome Medicine

Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet

(2016) Douglas Mahana et al.   Genome Medicine

Impact of the gut microbiota on inflammation, obesity, and metabolic disease

(2016) Claire L. Boulangé et al.   Genome Medicine

From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease

(2015) Peter T. McKenney et al.   CELL

Soil-borne reservoirs of antibiotic-resistant bacteria are established following therapeutic treatment of dairy calves

(2015) Jinxin Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks

(2015) Andrey Morgun et al.   GUT

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice

(2015) Kirsty Brown et al.   ISME Journal

Diagnosis and Treatment ofClostridium difficilein Adults

(2015) Natasha Bagdasarian et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Fecal microbiota transplantation in gastrointestinal disease: 2015 update and the road ahead

(2015) Thomas Borody et al.   Expert Review of Gastroenterology & Hepatology

Distinct but Spatially Overlapping Intestinal Niches for Vancomycin-Resistant Enterococcus faecium and Carbapenem-Resistant Klebsiella pneumoniae

(2015) Silvia Caballero et al.   PLoS Pathogens

Maternal Antibiotic-Induced Early Changes in Microbial Colonization Selectively Modulate Colonic Permeability and Inducible Heat Shock Proteins, and Digesta Concentrations of Alkaline Phosphatase and TLR-Stimulants in Swine Offspring

(2015) Marie-Edith Arnal et al.   PLoS One

Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin

(2015) Lindsey Chambers et al.   PLoS One

From Stool Transplants to Next-Generation Microbiota Therapeutics

(2014) Elaine O. Petrof et al.   GASTROENTEROLOGY

Rumen transfaunation

(2014) E.J. DePeters et al.   IMMUNOLOGY LETTERS

Gut microbiota modulation: probiotics, antibiotics or fecal microbiota transplantation?

(2014) Giovanni Cammarota et al.   Internal and Emergency Medicine

Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection

(2014) Susana Fuentes et al.   ISME Journal

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

(2014) Michelle G Rooks et al.   ISME Journal

Oral, Capsulized, Frozen Fecal Microbiota Transplantation for RelapsingClostridium difficileInfection

(2014) Ilan Youngster et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

The effect of rumen digesta inoculation on the time course of recovery from classical diet-induced milk fat depression in dairy cows

(2014) D.E. Rico et al.   JOURNAL OF DAIRY SCIENCE

Evaluation of the use of dry cow antibiotics in low somatic cell count cows

(2014) C.G. M. Scherpenzeel et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Antibiotic treatment of metritis in dairy cows: A systematic approach

(2014) P. Haimerl et al.   JOURNAL OF DAIRY SCIENCE

Diverse Antibiotic Resistance Genes in Dairy Cow Manure

(2014) F. Wichmann et al.   mBio

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

(2013) Zhigang Zhang et al.   ISME Journal

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Bacterial colonization factors control specificity and stability of the gut microbiota

(2013) S. Melanie Lee et al.   NATURE

Bacterial Community Mapping of the Mouse Gastrointestinal Tract

(2013) Shenghua Gu et al.   PLoS One

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

(2012) Ana Elena Pérez-Cobas et al.   GUT

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Characteristics of dairy calf ranches: Morbidity, mortality, antibiotic use practices, and biosecurity and biocontainment practices

(2012) W.L. Walker et al.   JOURNAL OF DAIRY SCIENCE

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Shifting the balance: antibiotic effects on host–microbiota mutualism

(2011) Benjamin P. Willing et al.   NATURE REVIEWS MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

Dynamics of culling risk with disposal codes reported by Dairy Herd Improvement dairy herds

(2010) P.J. Pinedo et al.   JOURNAL OF DAIRY SCIENCE

Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents1

(2010) P.J. Weimer et al.   JOURNAL OF DAIRY SCIENCE

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection

(2008) I. Sekirov et al.   INFECTION AND IMMUNITY