Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish

Influence of Fishmeal-Free Diets on Microbial Communities in Atlantic Salmon (Salmo salar) Recirculation Aquaculture Systems

(2016) Victor Schmidt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phaeobacter inhibens as probiotic bacteria in non-axenic Artemia and algae cultures

(2016) Torben Grotkjær et al.   AQUACULTURE

Contributions of tropodithietic acid and biofilm formation to the probiotic activity of Phaeobacter inhibens

(2016) Wenjing Zhao et al.   BMC MICROBIOLOGY

Probiotic Strains for Disease Management in Hatchery Larviculture of the Eastern OysterCrassostrea virginica

(2016) Saebom Sohn et al.   JOURNAL OF SHELLFISH RESEARCH

Resurrecting the intestinal microbiota to combat antibiotic-resistant pathogens

(2016) Eric G. Pamer   SCIENCE

Implications of Ecological Niche Differentiation in Marine Bacteria for Microbial Management in Aquaculture to Prevent Bacterial Disease

(2016) Tom Defoirdt   PLoS Pathogens

Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies

(2015) Karen E Sullam et al.   ISME Journal

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Effect of the probiotic strainPhaeobacter gallaeciensisafter bacterial challenge on the complete larval development ofPecten maximus

(2014) Bertrand Genard et al.   AQUATIC LIVING RESOURCES

Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled Pilot Study

(2014) Ilan Youngster et al.   CLINICAL INFECTIOUS DISEASES

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

(2014) Casey M. Theriot et al.   Nature Communications

Oligotyping reveals community level habitat selection within the genus Vibrio

(2014) Victor T. Schmidt et al.   Frontiers in Microbiology

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

(2014) Martin S. Llewellyn et al.   Frontiers in Microbiology

Protection of cod larvae from vibriosis by Phaeobacter spp.: A comparison of strains and introduction times

(2013) Paul W. D'Alvise et al.   AQUACULTURE

Quorum sensing-disrupting compounds protect larvae of the giant freshwater prawn Macrobrachium rosenbergii from Vibrio harveyi infection

(2013) Gde Sasmita Julyantoro Pande et al.   AQUACULTURE

Probiotic Strains for Shellfish Aquaculture: Protection of Eastern Oyster,Crassostrea virginica, Larvae and Juveniles Againsl Bacterial Challenge

(2013) Murni Karim et al.   JOURNAL OF SHELLFISH RESEARCH

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens

(2013) Katharine M. Ng et al.   NATURE

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

(2013) A. Murat Eren et al.   PLoS One

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

(2010) C. Manichanh et al.   GENOME RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection

(2008) I. Sekirov et al.   INFECTION AND IMMUNITY

Oxytetracycline Treatment Reduces Bacterial Diversity of Intestinal Microbiota of Atlantic Salmon

(2008) Paola Navarrete et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES

Methods for generating and colonizing gnotobiotic zebrafish

(2008) Linh N Pham et al.   Nature Protocols

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics