Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells

Accuracy of parameter estimation for auto-regulatory transcriptional feedback loops from noisy data

(2019) Zhixing Cao et al.   Journal of the Royal Society Interface

Accurate Recycling of Parental Histones Reproduces the Histone Modification Landscape during DNA Replication

(2018) Nazaret Reverón-Gómez et al.   MOLECULAR CELL

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Size control in mammalian cells involves modulation of both growth rate and cell cycle duration

(2018) Clotilde Cadart et al.   Nature Communications

Linear mapping approximation of gene regulatory networks with stochastic dynamics

(2018) Zhixing Cao et al.   Nature Communications

Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation

(2018) Caroline R. Bartman et al.   MOLECULAR CELL

Genomic encoding of transcriptional burst kinetics

(2018) Anton J. M. Larsson et al.   NATURE

Homeostasis of protein and mRNA concentrations in growing cells

(2018) Jie Lin et al.   Nature Communications

Making sense of snapshot data: ergodic principle for clonal cell populations

(2017) Philipp Thomas   Journal of the Royal Society Interface

Elimination of intermediate species in multiscale stochastic reaction networks

(2016) Daniele Cappelletti et al.   ANNALS OF APPLIED PROBABILITY

Conflict Resolution in the Genome: How Transcription and Replication Make It Work

(2016) Stephan Hamperl et al.   CELL

Applications and implications of the exponentially modified gamma distribution as a model for time variabilities related to cell proliferation and gene expression

(2016) A. Golubev   JOURNAL OF THEORETICAL BIOLOGY

Digital Quantification of Proteins and mRNA in Single Mammalian Cells

(2016) Cem Albayrak et al.   MOLECULAR CELL

Stochastic Kinetics of Nascent RNA

(2016) Heng Xu et al.   PHYSICAL REVIEW LETTERS

Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes

(2016) Mohammad Soltani et al.   PLoS Computational Biology

Single-cell analysis of transcription kinetics across the cell cycle

(2016) Samuel O Skinner et al.   eLife

Control of Transcript Variability in Single Mammalian Cells

(2015) Nico Battich et al.   CELL

Bursty Gene Expression in the Intact Mammalian Liver

(2015) Keren Bahar Halpern et al.   MOLECULAR CELL

Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms

(2015) Olivia Padovan-Merhar et al.   MOLECULAR CELL

Lineage correlations of single cell division time as a probe of cell-cycle dynamics

(2015) Oded Sandler et al.   NATURE

Effects of DNA replication on mRNA noise

(2015) Joseph R. Peterson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanistic links between cellular trade-offs, gene expression, and growth

(2015) Andrea Y. Weiße et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell western blotting

(2014) Alex J Hughes et al.   NATURE METHODS

Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells

(2014) Hiroshi Ochiai et al.   Scientific Reports

Transcription Factors Modulate c-Fos Transcriptional Bursts

(2014) Adrien Senecal et al.   Cell Reports

Markov chain Monte Carlo inference for Markov jump processes via the linear noise approximation

(2013) V. Stathopoulos et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Stimulus-induced modulation of transcriptional bursting in a single mammalian gene

(2013) N. Molina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell cycle synchronization by nutrient modulation

(2012) Yuan Tian et al.   Integrative Biology

Steady-state fluctuations of a genetic feedback loop: An exact solution

(2012) R. Grima et al.   JOURNAL OF CHEMICAL PHYSICS

Transcriptional burst frequency and burst size are equally modulated across the human genome

(2012) R. D. Dar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NONO couples the circadian clock to the cell cycle

(2012) E. Kowalska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms

(2012) Claude Gérard et al.   PLoS Computational Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

General properties of transcriptional time series in Escherichia coli

(2011) Lok-hang So et al.   NATURE GENETICS

Random partitioning of molecules at cell division

(2011) D. Huh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics

(2011) D. M. Suter et al.   SCIENCE

Protein Dynamics in Individual Human Cells: Experiment and Theory

(2009) Ariel Aharon Cohen et al.   PLoS One

Sensitivity analysis: from model parameters to system behaviour

(2008) Brian Ingalls   Essays in Biochemistry

Single-RNA counting reveals alternative modes of gene expression in yeast

(2008) Daniel Zenklusen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA