Making sense of snapshot data: ergodic principle for clonal cell populations

Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data

(2017) Takashi Nozoe et al.   PLoS Genetics

An aging-independent replicative lifespan in a symmetrically dividing eukaryote

(2017) Eric C Spivey et al.   eLife

Noise and Epigenetic Inheritance of Single-Cell Division Times Influence Population Fitness

(2016) Bram Cerulus et al.   CURRENT BIOLOGY

Molecular circuits for dynamic noise filtering

(2016) Christoph Zechner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise-driven growth rate gain in clonal cellular populations

(2016) Mikihiro Hashimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes

(2016) Mohammad Soltani et al.   PLoS Computational Biology

Single-cell analysis of transcription kinetics across the cell cycle

(2016) Samuel O Skinner et al.   eLife

Microbial individuality: how single-cell heterogeneity enables population level strategies

(2015) Bruno MC Martins et al.   CURRENT OPINION IN MICROBIOLOGY

Single-cell protein dynamics reproduce universal fluctuations in cell populations

(2015) Naama Brenner et al.   EUROPEAN PHYSICAL JOURNAL E

Analyzing the dynamics of cell cycle processes from fixed samples through ergodic principles

(2015) Richard John Wheeler   MOLECULAR BIOLOGY OF THE CELL

Trajectories of cell-cycle progression from fixed cell populations

(2015) Gabriele Gut et al.   NATURE METHODS

Closed-form stochastic solutions for non-equilibrium dynamics and inheritance of cellular components over many cell divisions

(2015) Iain G. Johnston et al.   PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Contributions of Cell Growth and Biochemical Reactions to Nongenetic Variability of Cells

(2014) Anne Schwabe et al.   BIOPHYSICAL JOURNAL

Quantifying gene expression variability arising from randomness in cell division times

(2014) Duarte Antunes et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Stochasticity of metabolism and growth at the single-cell level

(2014) Daniel J. Kiviet et al.   NATURE

Phenotypic switching in gene regulatory networks

(2014) P. Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise Propagation in Synthetic Gene Circuits for Metabolic Control

(2014) Diego A. Oyarzún et al.   ACS Synthetic Biology

Global Proteome Turnover Analyses of the Yeasts S. cerevisiae and S. pombe

(2014) Romain Christiano et al.   Cell Reports

Age-dependent stochastic models for understanding population fluctuations in continuously cultured cells

(2013) E. B. Stukalin et al.   Journal of the Royal Society Interface

Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle

(2013) Ran Kafri et al.   NATURE

Slow Protein Fluctuations Explain the Emergence of Growth Phenotypes and Persistence in Clonal Bacterial Populations

(2013) Andrea Rocco et al.   PLoS One

OPTIMAL LINEAGE PRINCIPLE FOR AGE-STRUCTURED POPULATIONS

(2011) Yuichi Wakamoto et al.   EVOLUTION

General properties of transcriptional time series in Escherichia coli

(2011) Lok-hang So et al.   NATURE GENETICS

Separating intrinsic from extrinsic fluctuations in dynamic biological systems

(2011) A. Hilfinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Random partitioning of molecules at cell division

(2011) D. Huh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust Growth of Escherichia coli

(2010) Ping Wang et al.   CURRENT BIOLOGY

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Non-genetic heterogeneity of cells in development: more than just noise

(2009) S. Huang   DEVELOPMENT

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA