Peanut plant growth was altered by monocropping-associated microbial enrichment of rhizosphere microbiome

Volatile‐mediated antagonism of soil bacterial communities against fungi

(2019) Xiaogang Li et al.   ENVIRONMENTAL MICROBIOLOGY

Soil microbial species loss affects plant biomass and survival of an introduced bacterial strain, but not inducible plant defences

(2018) Viola Kurm et al.   ANNALS OF BOTANY

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils

(2018) Víctor J. Carrión et al.   ISME Journal

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Suppression of soil-borne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea

(2018) Xiaogang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

(2018) Xiaogang Li et al.   ISME Journal

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Current Insights into the Role of Rhizosphere Bacteria in Disease Suppressive Soils

(2017) Ruth Gómez Expósito et al.   Frontiers in Microbiology

A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization

(2017) Wayne Dawson et al.   Frontiers in Microbiology

Formulation of bacterial consortia from avocado ( Persea americana Mill.) and their effect on growth, biomass and superoxide dismutase activity of wheat seedlings under salt stress

(2016) Patricio J. Barra et al.   APPLIED SOIL ECOLOGY

Nocardioides zeicaulis sp. nov., an endophyte actinobacterium of maize

(2016) Peter Kämpfer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Cultivated Sub-Populations of Soil Microbiomes Retain Early Flowering Plant Trait

(2016) Kevin Panke-Buisse et al.   MICROBIAL ECOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plant glutathione peroxidases: Emerging role of the antioxidant enzymes in plant development and stress responses

(2015) Krisztina Bela et al.   JOURNAL OF PLANT PHYSIOLOGY

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

(2015) Wietse de Boer et al.   PLoS One

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Comparative changes in the antioxidant system in the flag leaf of early and normally senescing near-isogenic lines of wheat (Triticum aestivum L.)

(2014) Hongwei Li et al.   PLANT CELL REPORTS

Soil sickness of peanuts is attributable to modifications in soil microbes induced by peanut root exudates rather than to direct allelopathy

(2014) Xiao-gang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biodiversity and species identity shape the antifungal activity of bacterial communities

(2013) Alexandre Jousset et al.   ECOLOGY

Reactive oxygen species scavenging capacities of cotton (Gossypium hirsutum) cultivars under combined drought and heat induced oxidative stress

(2013) Askim Hediye Sekmen et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Plant-Soil Feedbacks and Soil Sickness: From Mechanisms to Application in Agriculture

(2013) Li-Feng Huang et al.   JOURNAL OF CHEMICAL ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Apple Replant Disease: Role of Microbial Ecology in Cause and Control

(2012) Mark Mazzola et al.   Annual Review of Phytopathology

Relationships between Arabidopsis genotype-specific biomass accumulation and associated soil microbial communities

(2012) Akifumi Sugiyama et al.   Botany

Genomic comparison of the endophyte Herbaspirillum seropedicaeSmR1 and the phytopathogen Herbaspirillum rubrisubalbicansM1 by suppressive subtractive hybridization and partial genome sequencing

(2012) Rose A. Monteiro et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Genome Sequence of Sphingomonas sp. Strain PAMC 26621, an Arctic-Lichen-Associated Bacterium Isolated from a Cetraria sp.

(2012) H. Lee et al.   JOURNAL OF BACTERIOLOGY

Growth response of crops to soil microbial communities from conventional monocropping and tree-based intercropping systems

(2012) L. D. Bainard et al.   PLANT AND SOIL

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions

(2011) D. Blom et al.   ENVIRONMENTAL MICROBIOLOGY

Volatile-Mediated Killing ofArabidopsis thalianaby Bacteria Is Mainly Due to Hydrogen Cyanide

(2010) Dirk Blom et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Soil microbes drive the classic plant diversity–productivity pattern

(2010) Stefan A. Schnitzer et al.   ECOLOGY

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

In vitroobservation of the molecular interaction between NodD and its inducer naringenin as monitored by fluorescence resonance energy transfer

(2008) Fengqing Li et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Multitrophic interactions in the rhizosphere 
Rhizosphere microbiology: at the interface of many disciplines and expertises

(2008) Anton Hartmann et al.   FEMS MICROBIOLOGY ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY

Bacterial endophytes: recent developments and applications

(2007) Robert P. Ryan et al.   FEMS MICROBIOLOGY LETTERS