Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster
Published 2020 View Full Article
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Title
Transposable elements contribute to the genomic response to insecticides in
Drosophila melanogaster
Authors
Keywords
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Journal
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Volume 375, Issue 1795, Pages 20190341
Publisher
The Royal Society
Online
2020-02-10
DOI
10.1098/rstb.2019.0341
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Note: Only part of the references are listed.- Larvae of Drosophila melanogaster exhibit transcriptional activation of immune response pathways and antimicrobial peptides during recovery from supercooling stress
- (2019) Tomáš Štětina et al. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
- (2019) Gabriel E. Rech et al. PLoS Genetics
- The histone methyltransferase G9a regulates tolerance to oxidative stress–induced energy consumption
- (2019) Human Riahi et al. PLOS BIOLOGY
- Demographic History of the Human Commensal Drosophila melanogaster
- (2019) J Roman Arguello et al. Genome Biology and Evolution
- ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the Drosophila blastoderm
- (2019) Marta Bozek et al. GENOME RESEARCH
- Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells
- (2019) Christopher D Todd et al. eLife
- Transposable elements: all mobile, all different, some stress responsive, some adaptive?
- (2018) Sophie Lanciano et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Contribution of transposable elements in the plant's genome
- (2018) Mahbod Sahebi et al. GENE
- Identification and interaction of multiple genes resulting in DDT resistance in the 91-R strain of Drosophila melanogaster by RNAi approaches
- (2018) Ju Hyeon Kim et al. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY
- Replicability and Prediction: Lessons and Challenges from GWAS
- (2018) Urko M. Marigorta et al. TRENDS IN GENETICS
- Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
- (2018) Lidia Mateo et al. Scientific Reports
- Regulatory SNPs and their widespread effects on the transcriptome
- (2018) Vasily M Merkulov et al. JOURNAL OF BIOSCIENCES
- Population-specific dynamics and selection patterns of transposable element insertions in European natural populations
- (2018) Emmanuelle Lerat et al. MOLECULAR ECOLOGY
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction
- (2017) Britta Mueller et al. GENES & DEVELOPMENT
- Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids
- (2017) Valèria Romero-Soriano et al. Genome Biology and Evolution
- Changes in Neuronal Signaling and Cell Stress Response Pathways are Associated with a Multigenic Response of Drosophila melanogaster to DDT Selection
- (2017) Keon Mook Seong et al. Genome Biology and Evolution
- Describing the role of Drosophila melanogaster ABC transporters in insecticide biology using CRISPR-Cas9 knockouts
- (2017) Shane Denecke et al. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response
- (2017) Vivien Horváth et al. TRENDS IN GENETICS
- Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging
- (2017) Rachael C. Kuintzle et al. Nature Communications
- Concentration dependent chromatin states induced by the bicoid morphogen gradient
- (2017) Colleen E Hannon et al. eLife
- Charting the genotype-phenotype map: lessons from the Drosophila melanogaster Genetic Reference Panel
- (2017) Trudy F.C. Mackay et al. Wiley Interdisciplinary Reviews-Developmental Biology
- Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster
- (2017) Hung Le Manh et al. Scientific Reports
- dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data
- (2016) Sergi Sayols et al. BMC BIOINFORMATICS
- Elevated Linkage Disequilibrium and Signatures of Soft Sweeps Are Common in Drosophila melanogaster
- (2016) Nandita R. Garud et al. GENETICS
- Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster
- (2016) Martin Kapun et al. MOLECULAR BIOLOGY AND EVOLUTION
- The industrial melanism mutation in British peppered moths is a transposable element
- (2016) Arjen E. van’t Hof et al. NATURE
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- FlyBase at 25: looking to the future
- (2016) L. Sian Gramates et al. NUCLEIC ACIDS RESEARCH
- Retrotransposons as regulators of gene expression
- (2016) R. A. Elbarbary et al. SCIENCE
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila
- (2016) Miriam Merenciano et al. PLoS Genetics
- Elevated Linkage Disequilibrium and Signatures of Soft Sweeps Are Common in Drosophila melanogaster
- (2016) Nandita R. Garud et al. GENETICS
- The contribution of transposable elements to size variations between four teleost genomes
- (2016) Bo Gao et al. Mobile DNA
- Indy gene variation in natural populations confers fitness advantage and life span extension through transposon insertion
- (2016) Chen-Tseh Zhu et al. Aging-US
- UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
- (2015) Laurent Modolo et al. BMC BIOINFORMATICS
- Complex and multi-allelic copy number variation in human disease
- (2015) Christina L. Usher et al. Briefings in Functional Genomics
- The Dominance Effect of the Adaptive Transposable Element Insertion Bari-Jheh Depends on the Genetic Background
- (2015) Lain Guio et al. Genome Biology and Evolution
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- A family of transposable elements co-opted into developmental enhancers in the mouse neocortex
- (2015) James H. Notwell et al. Nature Communications
- Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
- (2015) Vincent J. Lynch et al. Cell Reports
- Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
- (2015) Irina Makarevitch et al. PLoS Genetics
- Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
- (2015) Kristofer Davie et al. PLoS Genetics
- The differential view of genotype–phenotype relationships
- (2015) Virginie Orgogozo et al. Frontiers in Genetics
- Exhaustive data mining comparison of the effects of low doses of ionizing radiation, formaldehyde and dioxins
- (2015) Alexey Moskalev et al. BMC GENOMICS
- piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing
- (2014) Bo W. Han et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- The transposable elementBari-Jhehmediates oxidative stress response in Drosophila
- (2014) Lain Guio et al. MOLECULAR ECOLOGY
- The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
- (2014) Xinyi Lu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Drosophila ABC Transporter Regulates Lifespan
- (2014) He Huang et al. PLoS Genetics
- A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
- (2014) Lidia Mateo et al. PLoS Genetics
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- The advantages and limitations of trait analysis with GWAS: a review
- (2013) Arthur Korte et al. Plant Methods
- Do pollutants affect insecticide-driven gene selection in mosquitoes? Experimental evidence from transcriptomics
- (2012) Rodolphe Poupardin et al. AQUATIC TOXICOLOGY
- The Drosophila melanogaster Genetic Reference Panel
- (2012) Trudy F. C. Mackay et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Insecticide Resistance Mechanisms in the Green Peach Aphid Myzus persicae (Hemiptera: Aphididae) I: A Transcriptomic Survey
- (2012) Andrea X. Silva et al. PLoS One
- The struggle for life of the genome's selfish architects
- (2011) Aurélie Hua-Van et al. Biology Direct
- Transcriptional regulation of xenobiotic detoxification in Drosophila
- (2011) J. R. Misra et al. GENES & DEVELOPMENT
- Copy-Number Variation: The Balance between Gene Dosage and Expression in Drosophila melanogaster
- (2011) Jun Zhou et al. Genome Biology and Evolution
- Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster
- (2011) J. Zhang et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- Hole-in-One Mutant Phenotypes Link EGFR/ERK Signaling to Epithelial Tissue Repair in Drosophila
- (2011) Jennifer A. Geiger et al. PLoS One
- Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data
- (2011) Dongjun Chung et al. PLoS Computational Biology
- Population Genomics of Transposable Elements in Drosophila melanogaster
- (2010) D. A. Petrov et al. MOLECULAR BIOLOGY AND EVOLUTION
- Circadian Clock Regulates Response to Pesticides in Drosophila via Conserved Pdp1 Pathway
- (2010) Laura Michelle Beaver et al. TOXICOLOGICAL SCIENCES
- Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
- (2010) Joshua M. Schmidt et al. PLoS Genetics
- A Recent Adaptive Transposable Element Insertion Near Highly Conserved Developmental Loci in Drosophila melanogaster
- (2009) J. Gonzalez et al. MOLECULAR BIOLOGY AND EVOLUTION
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
- (2008) Josefa González et al. PLOS BIOLOGY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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