Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems

Species richness change across spatial scales

(2019) Jonathan M. Chase et al.   OIKOS

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

(2019) Hannah Weigand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ten-year assessment of the 100 priority questions for global biodiversity conservation

(2018) Tommaso Jucker et al.   CONSERVATION BIOLOGY

A geostatistical state-space model of animal densities for stream networks

(2018) Daniel J. Hocking et al.   ECOLOGICAL APPLICATIONS

Fundamental contradictions among observational and experimental estimates of non-trophic species interactions

(2018) Allison K. Barner et al.   ECOLOGY

Biodiversity monitoring, earth observations and the ecology of scale

(2018) Christopher B. Anderson   ECOLOGY LETTERS

Geostatistical Prediction of Microbial Water Quality Throughout a Stream Network Using Meteorology, Land Cover, and Spatiotemporal Autocorrelation

(2018) David A. Holcomb et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Omics Advances in Ecotoxicology

(2018) Xiaowei Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

The Alliance for Freshwater Life : A global call to unite efforts for freshwater biodiversity science and conservation

(2018) William Darwall et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Organic matter and nutrient inputs from large wildlife influence ecosystem function in the Mara River, Africa

(2018) Amanda L. Subalusky et al.   ECOLOGY

Embracing scale-dependence to achieve a deeper understanding of biodiversity and its change across communities

(2018) Jonathan M. Chase et al.   ECOLOGY LETTERS

Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers

(2018) Jan-Niklas Macher et al.   Molecular Ecology Resources

Transient phenomena in ecology

(2018) Alan Hastings et al.   SCIENCE

Estimating species distribution and abundance in river networks using environmental DNA

(2018) Luca Carraro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disturbance reverses classic biodiversity predictions in river-like landscapes

(2018) Eric Harvey et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Environmental DNA Time Series in Ecology

(2018) Miklós Bálint et al.   TRENDS IN ECOLOGY & EVOLUTION

Measurement of Biodiversity (MoB): A method to separate the scale-dependent effects of species abundance distribution, density, and aggregation on diversity change

(2018) Daniel J. McGlinn et al.   Methods in Ecology and Evolution

Dispersal in dendritic networks: Ecological consequences on the spatial distribution of population densities

(2017) Florian Altermatt et al.   FRESHWATER BIOLOGY

Freshwater biomonitoring in the Information Age

(2017) François Keck et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring

(2017) Laure Apothéloz-Perret-Gentil et al.   Molecular Ecology Resources

Behavior and season affect crayfish detection and density inference using environmental DNA

(2017) Nicholas Dunn et al.   Ecology and Evolution

Effects of silver nanoparticles on nitrification and associated nitrous oxide production in aquatic environments

(2017) Yanling Zheng et al.   Science Advances

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication

(2017) Marie-Eve Monchamp et al.   Nature Ecology & Evolution

Connecting Earth observation to high-throughput biodiversity data

(2017) Alex Bush et al.   Nature Ecology & Evolution

Zooplankton Community Profiling in a Eutrophic Freshwater Ecosystem-Lake Tai Basin by DNA Metabarcoding

(2017) Jianghua Yang et al.   Scientific Reports

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

A network approach for inferring species associations from co-occurrence data

(2016) Naia Morueta-Holme et al.   ECOGRAPHY

Biodiversity and ecosystem stability across scales in metacommunities

(2016) Shaopeng Wang et al.   ECOLOGY LETTERS

Lessons from the macroinvertebrates: species-genetic diversity correlations highlight important dissimilar relationships

(2016) Mathew Seymour et al.   FRESHWATER BIOLOGY

Dendritic network models: Improving isoscapes and quantifying influence of landscape and in-stream processes on strontium isotopes in rivers

(2016) Sean R. Brennan et al.   GEOPHYSICAL RESEARCH LETTERS

Trade-off between taxon diversity and functional diversity in European lake ecosystems

(2016) Lars Grossmann et al.   MOLECULAR ECOLOGY

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

(2016) Nicole A. Fahner et al.   PLoS One

Improving the forecast for biodiversity under climate change

(2016) M. C. Urban et al.   SCIENCE

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

PrimerMiner : an r package for development and in silico validation of DNA metabarcoding primers

(2016) Vasco Elbrecht et al.   Methods in Ecology and Evolution

The ecologist's field guide to sequence-based identification of biodiversity

(2016) Simon Creer et al.   Methods in Ecology and Evolution

In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River

(2016) M. V. Cannon et al.   Scientific Reports

Estimating species richness using environmental DNA

(2016) Brett P. Olds et al.   Ecology and Evolution

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects

(2016) Vasco Elbrecht et al.   PeerJ

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms

(2015) Katherine M. Strickler et al.   BIOLOGICAL CONSERVATION

The ecological forecast horizon, and examples of its uses and determinants

(2015) Owen L. Petchey et al.   ECOLOGY LETTERS

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Dendritic network structure and dispersal affect temporal dynamics of diversity and species persistence

(2015) Mathew Seymour et al.   OIKOS

A comparative analysis reveals weak relationships between ecological factors and beta diversity of stream insect metacommunities at two spatial levels

(2015) Jani Heino et al.   Ecology and Evolution

Near-global freshwater-specific environmental variables for biodiversity analyses in 1 km resolution

(2015) Sami Domisch et al.   Scientific Data

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Ecosystem stability in space: α, β and γ variability

(2014) Shaopeng Wang et al.   ECOLOGY LETTERS

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Spatial sampling on streams: principles for inference on aquatic networks

(2014) Nicholas A. Som et al.   ENVIRONMETRICS

Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams

(2014) Stephen F. Jane et al.   Molecular Ecology Resources

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Applications of spatial statistical network models to stream data

(2014) Daniel J. Isaak et al.   Wiley Interdisciplinary Reviews-Water

Diversity in riverine metacommunities: a network perspective

(2013) Florian Altermatt   AQUATIC ECOLOGY

River network properties shape α-diversity and community similarity patterns of aquatic insect communities across major drainage basins

(2013) Florian Altermatt et al.   JOURNAL OF BIOGEOGRAPHY

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead

(2013) Simon Joly et al.   Molecular Ecology Resources

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA

(2012) DAVID M. LODGE et al.   MOLECULAR ECOLOGY

Biodiversity loss and its impact on humanity

(2012) Bradley J. Cardinale et al.   NATURE

Dendritic connectivity controls biodiversity patterns in experimental metacommunities

(2012) F. Carrara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Continental-Scale Effects of Nutrient Pollution on Stream Ecosystem Functioning

(2012) G. Woodward et al.   SCIENCE

Detecting Causality in Complex Ecosystems

(2012) G. Sugihara et al.   SCIENCE

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

Implications of bias in conservation research and investment for freshwater species

(2011) William R. T. Darwall et al.   Conservation Letters

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

Use of multiple dispersal pathways facilitates amphibian persistence in stream networks

(2010) E. H. Campbell Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing Macroinvertebrate Biodiversity in Freshwater Ecosystems: Advances and Challenges in DNA-based Approaches

(2010) Michael E. Pfrender et al.   QUARTERLY REVIEW OF BIOLOGY

Freshwater Ecoregions of the World: A New Map of Biogeographic Units for Freshwater Biodiversity Conservation

(2008) Robin Abell et al.   BIOSCIENCE

Climate change affects colonization dynamics in a metacommunity of three Daphnia species

(2008) FLORIAN ALTERMATT et al.   GLOBAL CHANGE BIOLOGY

Neutral metacommunity models predict fish diversity patterns in Mississippi–Missouri basin

(2008) Rachata Muneepeerakul et al.   NATURE