Zooplankton Community Profiling in a Eutrophic Freshwater Ecosystem-Lake Tai Basin by DNA Metabarcoding

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(2016)   MOLECULAR ECOLOGY

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(2016)   MOLECULAR ECOLOGY

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species

(2016) Aitor Albaina et al.   Ecology and Evolution

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(2016)   GLOBAL CHANGE BIOLOGY

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(2016)   MOLECULAR ECOLOGY

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(2016)   MOLECULAR ECOLOGY

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(2016)   MOLECULAR ECOLOGY

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(2016)   Methods in Ecology and Evolution

Unreliable quantitation of species abundance based on high-throughput sequencing data of zooplankton communities

(2015) C Sun et al.   Aquatic Biology

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

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(2015)   FRESHWATER BIOLOGY

Metabarcoding approach for nonindigenous species surveillance in marine coastal waters

(2015) Anastasija Zaiko et al.   MARINE POLLUTION BULLETIN

Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material

(2015) Austen C. Thomas et al.   Molecular Ecology Resources

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

(2015) Philippe Esling et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Rising sea level, temperature, and precipitation impact plant and ecosystem responses to elevated CO2on a Chesapeake Bay wetland: review of a 28-year study

(2014) Bert G. Drake   GLOBAL CHANGE BIOLOGY

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens

(2014) Shadi Shokralla et al.   Molecular Ecology Resources

Performance comparison of genetic markers for high-throughput sequencing-based biodiversity assessment in complex communities

(2014) Aibin Zhan et al.   Molecular Ecology Resources

Eutrophication weakens stabilizing effects of diversity in natural grasslands

(2014) Yann Hautier et al.   NATURE

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Evaluation of ITS2-28S as a molecular marker for identification of calanoid copepods in the subtropical western North Pacific

(2013) Junya Hirai et al.   JOURNAL OF PLANKTON RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Bioinformatic challenges for DNA metabarcoding of plants and animals

(2012) ERIC COISSAC et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Application of an inexpensive and high-throughput genomic DNA extraction method for the molecular ecology of zooplanktonic diapausing eggs

(2011) Javier Montero-Pau et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Biodiversity improves water quality through niche partitioning

(2011) Bradley J. Cardinale   NATURE

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA

(2011) María C. Ávila-Arcos et al.   Scientific Reports

An Integrated Approach for Assessing Aquatic Ecological Carrying Capacity: A Case Study of Wujin District in the Tai Lake Basin, China

(2011) Chen Zeng et al.   International Journal of Environmental Research and Public Health

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Zooplankton diversity analysis through single-gene sequencing of a community sample

(2009) Ryuji J Machida et al.   BMC GENOMICS

DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition

(2009) Ann Bucklin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics

(2008) Kasper Munch et al.   SYSTEMATIC BIOLOGY