High-affinity recognition of specific tRNAs by an mRNA anticodon-binding groove

Discovery of Small-Molecule Antibiotics against a Unique tRNA-Mediated Regulation of Transcription in Gram-Positive Bacteria

(2019) Kyla M. Frohlich et al.   ChemMedChem

An evolving tale of two interacting RNAs-themes and variations of the T-box riboswitch mechanism

(2019) Krishna C. Suddala et al.   IUBMB LIFE

New tRNA contacts facilitate ligand binding in aMycobacterium smegmatisT box riboswitch

(2018) Anna V. Sherwood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hierarchical mechanism of amino acid sensing by the T-box riboswitch

(2018) Krishna C. Suddala et al.   Nature Communications

Real-space refinement in PHENIX for cryo-EM and crystallography

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies

(2018) Briana Van Treeck et al.   CELL

Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand

(2018) Jiacheng Zhang et al.   eLife

RNA phase transitions in repeat expansion disorders

(2017) Ankur Jain et al.   NATURE

An integrated, structure- and energy-based view of the genetic code

(2016) Henri Grosjean et al.   NUCLEIC ACIDS RESEARCH

Codon-Anticodon Recognition in theBacillus subtilis glyQST Box Riboswitch

(2015) Enrico Caserta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SEDPHAT – A platform for global ITC analysis and global multi-method analysis of molecular interactions

(2015) Huaying Zhao et al.   METHODS

Crystal structure of the Varkud satellite ribozyme

(2015) Nikolai B Suslov et al.   Nature Chemical Biology

T box riboswitches in Actinobacteria: Translational regulation via novel tRNA interactions

(2015) Anna V. Sherwood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and mechanism of the T-box riboswitches

(2015) Jinwei Zhang et al.   Wiley Interdisciplinary Reviews-RNA

The K-turn motif in riboswitches and other RNA species

(2014) David M.J. Lilley   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Direct Evaluation of tRNA Aminoacylation Status by the T-Box Riboswitch Using tRNA-mRNA Stacking and Steric Readout

(2014) Jinwei Zhang et al.   MOLECULAR CELL

Revisiting theHaloarcula marismortui50S ribosomal subunit model

(2013) Azat Gabdulkhakov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

(2013) Jinwei Zhang et al.   NATURE

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

(2013) Krishna C. Suddala et al.   NUCLEIC ACIDS RESEARCH

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders

(2013) Jean Lehmann et al.   NUCLEIC ACIDS RESEARCH

Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA

(2013) Jason C. Grigg et al.   STRUCTURE

Binding Efficiency of Protein–Protein Complexes

(2012) Eric S. Day et al.   BIOCHEMISTRY

Pseudoknot Preorganization of the PreQ1 Class I Riboswitch

(2012) Tobias Santner et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A new understanding of the decoding principle on the ribosome

(2012) Natalia Demeshkina et al.   NATURE

Correcting pervasive errors in RNA crystallography through enumerative structure prediction

(2012) Fang-Chieh Chou et al.   NATURE METHODS

Comparative Study between Transcriptionally- and Translationally-Acting Adenine Riboswitches Reveals Key Differences in Riboswitch Regulatory Mechanisms

(2011) Jean-François Lemay et al.   PLoS Genetics

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Ribozymes and Riboswitches: Modulation of RNA Function by Small Molecules

(2010) Jinwei Zhang et al.   BIOCHEMISTRY

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA

(2010) Nicholas J. Reiter et al.   NATURE

Biochemical Features and Functional Implications of the RNA-Based T-Box Regulatory Mechanism

(2009) A. Gutierrez-Preciado et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

(2009) Daniel J Klein et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure of the SAM-II riboswitch bound to S-adenosylmethionine

(2008) Sunny D Gilbert et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots

(2008) M. Taufer et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic analysis of T-box regulatory systems in bacteria

(2008) A. G. Vitreschak et al.   RNA