Microbial resistance and resilience in response to environmental changes under the higher intensity of human activities than global average level

Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column

(2019) Linta Reji et al.   ISME Journal

Resistant ammonia-oxidizing archaea endure, but adapting ammonia-oxidizing bacteria thrive in boreal lake sediments receiving nutrient-rich effluents

(2018) Sanni L. Aalto et al.   ENVIRONMENTAL MICROBIOLOGY

Resilience of bacteria, archaea, fungi and N-cycling microbial guilds under plough and conservation tillage, to agricultural drought

(2018) A. Kaurin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Repeated disturbances affect functional but not compositional resistance and resilience in an aquatic bacterioplankton community

(2018) Johanna Sjöstedt et al.   Environmental Microbiology Reports

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Methanogens Are Major Contributors to Nitrogen Fixation in Soils of the Florida Everglades

(2018) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Soil microbial moisture dependences and responses to drying-rewetting: The legacy of 18 years drought

(2018) Evy A. de Nijs et al.   GLOBAL CHANGE BIOLOGY

With or without trees: Resistance and resilience of soil microbial communities to drought and heat stress in a Mediterranean agroforestry system

(2018) Esther Guillot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential sensitivity of total and active soil microbial communities to drought and forest management

(2017) Felipe Bastida et al.   GLOBAL CHANGE BIOLOGY

Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters

(2017) Yu Shang et al.   PLoS One

Microbial interactions: ecology in a molecular perspective

(2016) Raíssa Mesquita Braga et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Archaea produce lower yields of N2 O than bacteria during aerobic ammonia oxidation in soil

(2016) Linda Hink et al.   ENVIRONMENTAL MICROBIOLOGY

Forest understory plant and soil microbial response to an experimentally induced drought and heat-pulse event: the importance of maintaining the continuum

(2016) Isabell von Rein et al.   GLOBAL CHANGE BIOLOGY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disturbance Increases Microbial Community Diversity and Production in Marine Sediments

(2016) Pierre E. Galand et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Editorial: Microbial Responses to Environmental Changes

(2015) Jürg B. Logue et al.   Frontiers in Microbiology

Future Coastal Population Growth and Exposure to Sea-Level Rise and Coastal Flooding - A Global Assessment

(2015) Barbara Neumann et al.   PLoS One

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Soil seed banks and their germination responses to cadmium and salinity stresses in coastal wetlands affected by reclamation and urbanization based on indoor and outdoor experiments

(2014) Junhong Bai et al.   JOURNAL OF HAZARDOUS MATERIALS

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Phylogenetic distance and species richness interactively affect the productivity of bacterial communities

(2013) Patrick A. Venail et al.   ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Experimental evidence that evolutionarily diverse assemblages result in higher productivity

(2013) M. W. Cadotte   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Resistance and resilience of microbial communities - temporal and spatial insurance against perturbations

(2012) Didier L. Baho et al.   ENVIRONMENTAL MICROBIOLOGY

Lake microbial communities are resilient after a whole-ecosystem disturbance

(2012) Ashley Shade et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Assessment of heavy metal pollution in wetland soils from the young and old reclaimed regions in the Pearl River Estuary, South China

(2010) Junhong Bai et al.   ENVIRONMENTAL POLLUTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn

(2010) Belinda Phipson et al.   Statistical Applications in Genetics and Molecular Biology

Fewer permutations, more accurate P-values

(2009) Theo A. Knijnenburg et al.   BIOINFORMATICS

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE