Interaction and assembly processes of abundant and rare microbial communities during a diatom bloom process

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Microbial Community Dynamics and Assembly Follow Trajectories of an Early-Spring Diatom Bloom in a Semienclosed Bay

(2018) Huajun Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation

(2017) Wenjing Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Distinct succession patterns of abundant and rare bacteria in temporal microcosms with pollutants

(2017) Shuo Jiao et al.   ENVIRONMENTAL POLLUTION

Rare symbionts may contribute to the resilience of coral–algal assemblages

(2017) Maren Ziegler et al.   ISME Journal

Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China

(2017) Jingqiu Liao et al.   LIMNOLOGY AND OCEANOGRAPHY

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Invasion by Cordgrass Increases Microbial Diversity and Alters Community Composition in a Mangrove Nature Reserve

(2017) Min Liu et al.   Frontiers in Microbiology

Algae–bacteria interactions: Evolution, ecology and emerging applications

(2016) Rishiram Ramanan et al.   BIOTECHNOLOGY ADVANCES

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Network analysis reveals seasonal variation of co-occurrence correlations between Cyanobacteria and other bacterioplankton

(2016) Dayong Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Response of the bacterial community associated with a cosmopolitan marine diatom to crude oil shows a preference for the biodegradation of aromatic hydrocarbons

(2015) Sara Mishamandani et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms

(2015) Marine Landa et al.   ISME Journal

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

(2014) Linda Wilhelm et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

(2014) Francisco Dini-Andreote et al.   ISME Journal

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Changes in bacterial diversity in response to dissolved organic matter supply in a continuous culture experiment

(2013) M Landa et al.   AQUATIC MICROBIAL ECOLOGY

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Bacterial community structure on two alpine debris-covered glaciers and biogeography of Polaromonas phylotypes

(2013) Andrea Franzetti et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)

(2010) Tijana Glavina Del Rio et al.   Standards in Genomic Sciences

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Controls on Diatom Biogeography in the Ocean

(2009) P. Cermeno et al.   SCIENCE

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY