Microbial Community Dynamics and Assembly Follow Trajectories of an Early-Spring Diatom Bloom in a Semienclosed Bay

Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities

(2017) Michelle A. Berry et al.   ENVIRONMENTAL MICROBIOLOGY

Ruficoccus amylovorans gen. nov., sp. nov., an amylolytic and nitrate-reducing diazotroph of the family Puniceicoccaceae

(2017) Shih-Yao Lin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterization of Marinomonas algicida sp. nov., a novel algicidal marine bacterium isolated from seawater

(2017) Sylvia Kristyanto et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica

(2017) Hyunmin Koo et al.   Frontiers in Microbiology

Successional trajectories of bacterioplankton community over the complete cycle of a sudden phytoplankton bloom in the Xiangshan Bay, East China Sea

(2016) Heping Chen et al.   ENVIRONMENTAL POLLUTION

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Distinct Spatial Patterns of SAR11, SAR86, and Actinobacteria Diversity along a Transect in the Ultra-oligotrophic South Pacific Ocean

(2016) Nyree J. West et al.   Frontiers in Microbiology

Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization

(2016) Lucas D. Lopes et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms

(2015) Marine Landa et al.   ISME Journal

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Niche and metabolic principles explain patterns of diversity and distribution: theory and a case study with soil bacterial communities

(2015) Jordan G. Okie et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic shifts of bacterioplankton community composition along the Pearl Estuary: the potential impact of hypoxia and nutrients

(2015) Jiwen Liu et al.   Frontiers in Microbiology

Nitrite reductase genes as functional markers to investigate diversity of denitrifying bacteria during agricultural waste composting

(2014) Yaoning Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Diversity and geochemical structuring of bacterial communities along a salinity gradient in a carbonate aquifer subject to seawater intrusion

(2014) Marina Héry et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

(2014) Jacob A Cram et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Changes in bacterial diversity in response to dissolved organic matter supply in a continuous culture experiment

(2013) M Landa et al.   AQUATIC MICROBIAL ECOLOGY

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

(2013) Bernd Wemheuer et al.   FEMS MICROBIOLOGY ECOLOGY

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters

(2013) Joe D Taylor et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Bacterial community composition associated with freshwater algae: species specificity vs. dependency on environmental conditions and source community

(2012) Falk Eigemann et al.   FEMS MICROBIOLOGY ECOLOGY

Investigation of the algicidal exudate produced by Shewanella sp. IRI-160 and its effect on dinoflagellates

(2012) Kaytee L. Pokrzywinski et al.   HARMFUL ALGAE

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Progress in Understanding Harmful Algal Blooms: Paradigm Shifts and New Technologies for Research, Monitoring, and Management

(2011) Donald M. Anderson et al.   Annual Review of Marine Science

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Bioremediation efficiency of Gracilaria verrucosa for an integrated multi-trophic aquaculture system with Pseudosciaena crocea in Xiangshan harbor, China

(2011) Yuanzi Huo et al.   AQUACULTURE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Water column dynamics of Vibrio in relation to phytoplankton community composition and environmental conditions in a tropical coastal area

(2011) Maria E. Asplund et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton community distribution in relation to environmental parameters in three aquaculture systems in a Chinese subtropical eutrophic bay

(2011) ZB Jiang et al.   MARINE ECOLOGY PROGRESS SERIES

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre

(2009) Alexander Eiler et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Plankton composition and environmental factors contribute to Vibrio seasonality

(2009) Jeffrey W Turner et al.   ISME Journal

Characterization of Nitrifying, Denitrifying, and Overall Bacterial Communities in Permeable Marine Sediments of the Northeastern Gulf of Mexico

(2008) H. J. Mills et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Skill assessment for an operational algal bloom forecast system

(2008) Richard P. Stumpf et al.   JOURNAL OF MARINE SYSTEMS