DGCA: A comprehensive R package for Differential Gene Correlation Analysis

The immune system and hormone-receptor positive breast cancer: Is it really a dead end?

(2016) Maria Vittoria Dieci et al.   CANCER TREATMENT REVIEWS

Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse

(2016) Ye Zhang et al.   NEURON

The discordant method: a novel approach for differential correlation

(2015) Charlotte Siska et al.   BIOINFORMATICS

Distinct microbiological signatures associated with triple negative breast cancer

(2015) Sagarika Banerjee et al.   Scientific Reports

Multiscale Embedded Gene Co-expression Network Analysis

(2015) Won-Min Song et al.   PLoS Computational Biology

Integrative Analysis of DNA Methylation and Gene Expression Data Identifies EPAS1 as a Key Regulator of COPD

(2015) Seungyeul Yoo et al.   PLoS Genetics

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

The Interactions of Obesity, Inflammation and Insulin Resistance in Breast Cancer

(2015) David Rose et al.   Cancers

Regulation of glucose metabolism by p53: Emerging new roles for the tumor suppressor

(2015) Esha Madan et al.   Oncotarget

Vascular measurements correlate with estrogen receptor status

(2014) Mark C Lloyd et al.   BMC CANCER

Somatic mutation load of estrogen receptor-positive breast tumors predicts overall survival: an analysis of genome sequence data

(2014) Svasti Haricharan et al.   BREAST CANCER RESEARCH AND TREATMENT

An epigenomic approach to therapy for tamoxifen-resistant breast cancer

(2014) Qin Feng et al.   CELL RESEARCH

The Activating Transcription Factor 3 Protein Suppresses the Oncogenic Function of Mutant p53 Proteins

(2014) Saisai Wei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of human gene locus CYYR1: a complex multi-transcript system

(2014) Raffaella Casadei et al.   MOLECULAR BIOLOGY REPORTS

Destabilizing LSD1 by Jade-2 Promotes Neurogenesis: An Antibraking System in Neural Development

(2014) Xiao Han et al.   MOLECULAR CELL

Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases

(2014) M. Narayanan et al.   Molecular Systems Biology

Progesterone receptor-B enhances estrogen responsiveness of breast cancer cells via scaffolding PELP1- and estrogen receptor-containing transcription complexes

(2014) A R Daniel et al.   ONCOGENE

Integrative Genomics Reveals Novel Molecular Pathways and Gene Networks for Coronary Artery Disease

(2014) Ville-Petteri Mäkinen et al.   PLoS Genetics

Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer

(2014) F Al-Ejeh et al.   Oncogenesis

Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets

(2013) Yasir Rahmatallah et al.   BIOINFORMATICS

PDEF Promotes Luminal Differentiation and Acts as a Survival Factor for ER-Positive Breast Cancer Cells

(2013) Gilles Buchwalter et al.   CANCER CELL

Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease

(2013) Bin Zhang et al.   CELL

Targeting lactate metabolism for cancer therapeutics

(2013) Joanne R. Doherty et al.   JOURNAL OF CLINICAL INVESTIGATION

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Downregulation of Steroid Receptor Coactivator-2 Modulates Estrogen-Responsive Genes and Stimulates Proliferation of MCF-7 Breast Cancer Cells

(2013) Ingvild S. Fenne et al.   PLoS One

Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression

(2013) David Amar et al.   PLoS Computational Biology

Immunotherapeutic approaches in triple-negative breast cancer: latest research and clinical prospects

(2013) John Stagg et al.   Therapeutic Advances in Medical Oncology

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression

(2012) J. A. Dawson et al.   BIOINFORMATICS

DiffCorr: An R package to analyze and visualize differential correlations in biological networks

(2012) Atsushi Fukushima   GENE

Mutant p53: one name, many proteins

(2012) W. A. Freed-Pastor et al.   GENES & DEVELOPMENT

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

p53 mutations in cancer

(2012) Patricia A. J. Muller et al.   NATURE CELL BIOLOGY

Genome-Wide Location Analysis Reveals Distinct Transcriptional Circuitry by Paralogous Regulators Foxa1 and Foxa2

(2012) Irina M. Bochkis et al.   PLoS Genetics

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

Bimodal distribution of RNA expression levels in human skeletal muscle tissue

(2011) Clinton C Mason et al.   BMC GENOMICS

The Role of Calcium in the Activation of Estrogen Receptor-Alpha

(2011) S. D. Divekar et al.   CANCER RESEARCH

CNK3 and IPCEF1 produce a single protein that is required for HGF dependent Arf6 activation and migration

(2011) Myriam A. Attar et al.   EXPERIMENTAL CELL RESEARCH

Is My Network Module Preserved and Reproducible?

(2011) Peter Langfelder et al.   PLoS Computational Biology

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

MicroRNA-21 Is a Downstream Effector of AKT That Mediates Its Antiapoptotic Effects via Suppression of Fas Ligand

(2010) Danish Sayed et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Statistical methods for gene set co-expression analysis

(2009) YounJeong Choi et al.   BIOINFORMATICS

RACK1 promotes breast carcinoma proliferation and invasion/metastasis in vitro and in vivo

(2009) Xi-Xi Cao et al.   BREAST CANCER RESEARCH AND TREATMENT

Mutant p53 Gain-of-Function in Cancer

(2009) M. Oren et al.   Cold Spring Harbor Perspectives in Biology

Systems medicine: the future of medical genomics and healthcare

(2009) Charles Auffray et al.   Genome Medicine

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

(2009) Nicholas J. Hudson et al.   PLoS Computational Biology

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

PTEN Loss Promotes Mitochondrially Dependent Type II Fas-Induced Apoptosis via PEA-15

(2008) J. W. Peacock et al.   MOLECULAR AND CELLULAR BIOLOGY

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH