Multiscale Embedded Gene Co-expression Network Analysis

TPX2: of spindle assembly, DNA damage response, and cancer

(2014) Gernot Neumayer et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

BDNF Is Associated with SFRP1 Expression in Luminal and Basal-Like Breast Cancer Cell Lines and Primary Breast Cancer Tissues: A Novel Role in Tumor Suppression?

(2014) Laura Huth et al.   PLoS One

Orphan G Protein–Coupled Receptor GPR116 Regulates Pulmonary Surfactant Pool Size

(2013) James P. Bridges et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

PDEF Promotes Luminal Differentiation and Acts as a Survival Factor for ER-Positive Breast Cancer Cells

(2013) Gilles Buchwalter et al.   CANCER CELL

Control of Alveolar Differentiation by the Lineage Transcription Factors GATA6 and HOPX Inhibits Lung Adenocarcinoma Metastasis

(2013) William K.C. Cheung et al.   CANCER CELL

Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease

(2013) Bin Zhang et al.   CELL

Aquaporin Water Channels in the Mammary Gland: From Physiology to Pathophysiology and Neoplasia

(2013) Ali Mobasheri et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

ESR1 ligand-binding domain mutations in hormone-resistant breast cancer

(2013) Weiyi Toy et al.   NATURE GENETICS

Lung Surfactant Levels are Regulated by Ig-Hepta/GPR116 by Monitoring Surfactant Protein D

(2013) Taku Fukuzawa et al.   PLoS One

Essential Regulation of Lung Surfactant Homeostasis by the Orphan G Protein-Coupled Receptor GPR116

(2013) Mi Young Yang et al.   Cell Reports

GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility

(2012) V. Theodorou et al.   GENOME RESEARCH

The Forkhead Box Transcription Factor FOXC1 Promotes Breast Cancer Invasion by Inducing Matrix Metalloprotease 7 (MMP7) Expression

(2012) Steven T. Sizemore et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FOXC1 regulates the functions of human basal-like breast cancer cells by activating NF-κB signaling

(2012) J Wang et al.   ONCOGENE

Building complex networks with Platonic solids

(2012) Won-Min Song et al.   PHYSICAL REVIEW E

Hierarchical Information Clustering by Means of Topologically Embedded Graphs

(2012) Won-Min Song et al.   PLoS One

Cell Cycle Gene Networks Are Associated with Melanoma Prognosis

(2012) Li Wang et al.   PLoS One

Poor-prognosis estrogen receptor- positive disease: present and future clinical solutions

(2012) Per E. Lønning   Therapeutic Advances in Medical Oncology

Basal-Like Breast Cancer Defined by FOXC1 Expression Offers Superior Prognostic Value: A Retrospective Immunohistochemical Study

(2011) Partha S. Ray et al.   ANNALS OF SURGICAL ONCOLOGY

GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods

(2011) Thomas Schaffter et al.   BIOINFORMATICS

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Nested hierarchies in planar graphs

(2011) Won-Min Song et al.   DISCRETE APPLIED MATHEMATICS

Androgen receptor driven transcription in molecular apocrine breast cancer is mediated by FoxA1

(2011) Jessica L L Robinson et al.   EMBO JOURNAL

Cancer Testis Antigen, Ropporin, Is a Potential Target for Multiple Myeloma Immunotherapy

(2011) Maurizio Chiriva-Internati et al.   JOURNAL OF IMMUNOTHERAPY

Gene-Expression Signatures Can Distinguish Gastric Cancer Grades and Stages

(2011) Juan Cui et al.   PLoS One

Crowdsourcing Network Inference: The DREAM Predictive Signaling Network Challenge

(2011) R. J. Prill et al.   Science Signaling

A general co-expression network-based approach to gene expression analysis: comparison and applications

(2010) Jianhua Ruan et al.   BMC Systems Biology

Transcriptional Regulation of p21/CIP1 Cell Cycle Inhibitor by PDEF Controls Cell Proliferation and Mammary Tumor Progression

(2010) Jeremy S. Schaefer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Link prediction in complex networks: A survey

(2010) Linyuan Lü et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

CENTRALITY AND PERIPHERALITY IN FILTERED GRAPHS FROM DYNAMICAL FINANCIAL CORRELATIONS

(2009) F. POZZI et al.   ADVANCES IN COMPLEX SYSTEMS

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches

(2009) N. S. Watson-Haigh et al.   BIOINFORMATICS

The use of dynamical networks to detect the hierarchical organization of financial market sectors

(2009) T. Di Matteo et al.   EUROPEAN PHYSICAL JOURNAL B

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY

Lipolysis-Not inflammation, cell death, or lipogenesis-Is involved in adipose tissue loss in cancer cachexia

(2008) Mikael Rydén et al.   CANCER

Evidence for an Important Role of CIDEA in Human Cancer Cachexia

(2008) J. Laurencikiene et al.   CANCER RESEARCH

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA