The discordant method: a novel approach for differential correlation

Plasma Sphingolipids Associated with Chronic Obstructive Pulmonary Disease Phenotypes

(2015) Russell P. Bowler et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

mixtools: AnRPackage for Analyzing Finite Mixture Models

(2015) Tatiana Benaglia et al.   Journal of Statistical Software

Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets

(2014) Yinglei Lai et al.   BMC GENOMICS

Detecting Differentially Coexpressed Genes from Labeled Expression Data: A Brief Review

(2014) Mitsunori Kayano et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The multiMiR R package and database: integration of microRNA–target interactions along with their disease and drug associations

(2014) Yuanbin Ru et al.   NUCLEIC ACIDS RESEARCH

Targeted Therapy in Gliomas

(2014) Mohamed Ali Hamza et al.   Current Oncology Reports

Peripheral Blood Mononuclear Cell Gene Expression in Chronic Obstructive Pulmonary Disease

(2013) Timothy M. Bahr et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

miRCancer: a microRNA-cancer association database constructed by text mining on literature

(2013) B. Xie et al.   BIOINFORMATICS

MSPrep—Summarization, normalization and diagnostics for processing of mass spectrometry–based metabolomic data

(2013) Grant Hughes et al.   BIOINFORMATICS

Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations

(2013) Mitsunori Kayano et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Transcription factor-pathway coexpression analysis reveals cooperation between SP1 and ESR1 on dysregulating cell cycle arrest in non-hyperdiploid multiple myeloma

(2013) X Wang et al.   LEUKEMIA

Inflammation and Immune Response in COPD: Where Do We Stand?

(2013) Nikoletta Rovina et al.   MEDIATORS OF INFLAMMATION

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression

(2012) J. A. Dawson et al.   BIOINFORMATICS

Transcriptional and metabolic data integration and modeling for identification of active pathways

(2012) A. Jauhiainen et al.   BIOSTATISTICS

DiffCorr: An R package to analyze and visualize differential correlations in biological networks

(2012) Atsushi Fukushima   GENE

Targeted metabolomics identifies perturbations in amino acid metabolism that sub-classify patients with COPD

(2012) Baljit K. Ubhi et al.   Molecular BioSystems

An Empirical Bayesian Approach for Identifying Differential Coexpression in High-Throughput Experiments

(2011) John A. Dawson et al.   BIOMETRICS

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Differential coexpression analysis of obesity-associated networks in human subcutaneous adipose tissue

(2011) A J Walley et al.   INTERNATIONAL JOURNAL OF OBESITY

From RNA-seq reads to differential expression results

(2011) Alicia Oshlack et al.   GENOME BIOLOGY

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

Linear regression analysis for comparing two measurers or methods of measurement: But which regression?

(2010) John Ludbrook   CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY

Identifying set-wise differential co-expression in gene expression microarray data

(2009) Sung Cho et al.   BMC BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae

(2009) Patrick H. Bradley et al.   PLoS Computational Biology

Differential variability analysis of gene expression and its application to human diseases

(2008) J. W.K. Ho et al.   BIOINFORMATICS

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Posterior Error Probabilities and False Discovery Rates: Two Sides of the Same Coin

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH