QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.)

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

Construction of High-Density Genetic Map and Mapping Quantitative Trait Loci for Growth Habit-Related Traits of Peanut (Arachis hypogaea L.)

(2019) Li Li et al.   Frontiers in Plant Science

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination

(2018) Soraya C. M. Leal-Bertioli et al.   AMERICAN JOURNAL OF BOTANY

High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut

(2018) Gaurav Agarwal et al.   PLANT BIOTECHNOLOGY JOURNAL

High-Density Genetic Map Construction and Identification of QTLs Controlling Oleic and Linoleic Acid in Peanut using SLAF-seq and SSRs

(2018) X. H. Hu et al.   Scientific Reports

Development of a High-Density Genetic Map Based on Specific Length Amplified Fragment Sequencing and Its Application in Quantitative Trait Loci Analysis for Yield-Related Traits in Cultivated Peanut

(2018) Zhihui Wang et al.   Frontiers in Plant Science

Identification of transposable element markers associated with yield and quality traits from an association panel of independent mutants in peanut (Arachis hypogaea L.)

(2017) A. A. Hake et al.   EUPHYTICA

Genetic mapping of yield traits using RIL population derived from Fuchuan Dahuasheng and ICG6375 of peanut (Arachis hypogaea L.)

(2017) Yuning Chen et al.   MOLECULAR BREEDING

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut

(2017) Josh Clevenger et al.   Molecular Plant

Chromosomes A07 and A05 associated with stable and major QTLs for pod weight and size in cultivated peanut (Arachis hypogaea L.)

(2017) Huaiyong Luo et al.   THEORETICAL AND APPLIED GENETICS

Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.)

(2017) Anil A. Hake et al.   PLoS One

Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

(2016) Weigang Chen et al.   BMC GENETICS

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of Genomic Exchanges between Homeologous Chromosomes in a Cross of Peanut with Newly Synthetized Allotetraploid Hybrids

(2016) Joel R. Nguepjop et al.   Frontiers in Plant Science

Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.)

(2016) Li Huang et al.   Scientific Reports

High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc)

(2015) J. Zhang et al.   DNA RESEARCH

Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis

(2015) Soraya Leal-Bertioli et al.   GENETICS

Single Nucleotide Polymorphism Identification in Polyploids: A Review, Example, and Recommendations

(2015) Josh Clevenger et al.   Molecular Plant

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Natural variation inARF18gene simultaneously affects seed weight and silique length in polyploid rapeseed

(2015) Jing Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation ofBig Grain1significantly improves grain size by regulating auxin transport in rice

(2015) Linchuan Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.)

(2015) Li Huang et al.   THEORETICAL AND APPLIED GENETICS

Sustainable food production: constraints, challenges and choices by 2050

(2015) Fiona C. McKenzie et al.   Food Security

Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis

(2015) Soraya Leal-Bertioli et al.   GENETICS

Identification of a new maize inflorescence meristem mutant and association analysis using SLAF-seq method

(2014) Chao Xia et al.   EUPHYTICA

Fine mapping of quantitative trait loci for seed size traits in soybean

(2014) Fang-Teng Xie et al.   MOLECULAR BREEDING

Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data

(2014) Dongyuan Liu et al.   PLoS One

Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World

(2014) Manish K. Pandey et al.   PLoS One

A High-Density Genetic Map for Soybean Based on Specific Length Amplified Fragment Sequencing

(2014) Zhaoming Qi et al.   PLoS One

A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds

(2014) Shin Kato et al.   THEORETICAL AND APPLIED GENETICS

Changes in nitrogen metabolism and antioxidant enzyme activities of maize tassel in black soils region of northeast China

(2014) Hongwen Xu et al.   Frontiers in Plant Science

Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing

(2013) Yanxin Zhang et al.   BMC PLANT BIOLOGY

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut

(2012) Kenta Shirasawa et al.   BMC PLANT BIOLOGY

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

(2012) Hui Wang et al.   BMC PLANT BIOLOGY

Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

(2012) Daniel Fonceka et al.   BMC PLANT BIOLOGY

Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome

(2012) César D. Petroli et al.   PLoS One

Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)

(2011) B. Gautami et al.   MOLECULAR BREEDING

The CDG1 Kinase Mediates Brassinosteroid Signal Transduction from BRI1 Receptor Kinase to BSU1 Phosphatase and GSK3-like Kinase BIN2

(2011) Tae-Wuk Kim et al.   MOLECULAR CELL

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations

(2011) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS

From SNPs to functional polymorphism: The insight into biotechnology applications

(2010) Pei-Yu Liao et al.   BIOCHEMICAL ENGINEERING JOURNAL

Transcriptional and hormonal signaling control of Arabidopsis seed development

(2010) Xiaodong Sun et al.   CURRENT OPINION IN PLANT BIOLOGY

The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.)

(2008) R. K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics