Development of a High-Density Genetic Map Based on Specific Length Amplified Fragment Sequencing and Its Application in Quantitative Trait Loci Analysis for Yield-Related Traits in Cultivated Peanut

Implications of nitrogen phloem loading for carbon metabolism and transport during Arabidopsis development

(2017) James P. Santiago et al.   Journal of Integrative Plant Biology

Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.)

(2016) Weigang Chen et al.   BMC GENETICS

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Connecting Source with Sink: The Role of Arabidopsis AAP8 in Phloem Loading of Amino Acids

(2016) James P. Santiago et al.   PLANT PHYSIOLOGY

A DNA2 Homolog Is Required for DNA Damage Repair, Cell Cycle Regulation, and Meristem Maintenance in Plants

(2016) Ning Jia et al.   PLANT PHYSIOLOGY

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Density Genetic Linkage Map for Cucumber (Cucumis sativus L.): Based on Specific Length Amplified Fragment (SLAF) Sequencing and QTL Analysis of Fruit Traits in Cucumber

(2016) Wen-Ying Zhu et al.   Frontiers in Plant Science

Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.)

(2016) Li Huang et al.   Scientific Reports

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm

(2015) Jiaoping Zhang et al.   BMC GENOMICS

High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc)

(2015) J. Zhang et al.   DNA RESEARCH

Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq

(2015) Yan Peng et al.   MOLECULAR GENETICS AND GENOMICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Natural variation inARF18gene simultaneously affects seed weight and silique length in polyploid rapeseed

(2015) Jing Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative trait locus analysis of agronomic and quality-related traits in cultivated peanut (Arachis hypogaea L.)

(2015) Li Huang et al.   THEORETICAL AND APPLIED GENETICS

Using specific length amplified fragment sequencing to construct the high-density genetic map for Vitis (Vitis vinifera L. × Vitis amurensis Rupr.)

(2015) Yinshan Guo et al.   Frontiers in Plant Science

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)

(2014) Xiaojing Zhou et al.   BMC GENOMICS

A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.)

(2014) Na Li et al.   BMC PLANT BIOLOGY

The Genetic Architecture Of Maize Height

(2014) Jason A. Peiffer et al.   GENETICS

Fine mapping of quantitative trait loci for seed size traits in soybean

(2014) Fang-Teng Xie et al.   MOLECULAR BREEDING

Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World

(2014) Manish K. Pandey et al.   PLoS One

A High-Density Genetic Map for Soybean Based on Specific Length Amplified Fragment Sequencing

(2014) Zhaoming Qi et al.   PLoS One

A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds

(2014) Shin Kato et al.   THEORETICAL AND APPLIED GENETICS

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing

(2013) Yanxin Zhang et al.   BMC PLANT BIOLOGY

Association mapping for seed size and shape traits in soybean cultivars

(2013) Yuan Niu et al.   MOLECULAR BREEDING

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

The Use of SNP Markers for Linkage Mapping in Diploid and Tetraploid Peanuts

(2013) David J. Bertioli et al.   G3-Genes Genomes Genetics

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms

(2012) O. Sosnowski et al.   BIOINFORMATICS

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

(2012) Ervin D Nagy et al.   BMC GENOMICS

In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut

(2012) Kenta Shirasawa et al.   BMC PLANT BIOLOGY

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

(2012) Hui Wang et al.   BMC PLANT BIOLOGY

Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

(2012) Daniel Fonceka et al.   BMC PLANT BIOLOGY

Phenotypic and molecular dissection of ICRISAT mini core collection of peanut (Arachis hypogaea L.) for high oleic acid

(2012) Ganapati Mukri et al.   PLANT BREEDING

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome

(2012) César D. Petroli et al.   PLoS One

Construction of High-Density Genetic Linkage Maps and Mapping of Growth-Related Quantitative Trail Loci in the Japanese Flounder (Paralichthys olivaceus)

(2012) Wentao Song et al.   PLoS One

Advances in Arachis genomics for peanut improvement

(2011) Manish K. Pandey et al.   BIOTECHNOLOGY ADVANCES

Variability and Stability Analysis for Nutritional Traits in the Mini Core Collection of Peanut

(2011) Hari D. Upadhyaya et al.   CROP SCIENCE

A first insight into population structure and linkage disequilibrium in the US peanut minicore collection

(2011) Vikas Belamkar et al.   GENETICA

Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)

(2011) B. Gautami et al.   MOLECULAR BREEDING

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations

(2011) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS

Population structure and marker–trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection

(2011) Ming Li Wang et al.   THEORETICAL AND APPLIED GENETICS

From SNPs to functional polymorphism: The insight into biotechnology applications

(2010) Pei-Yu Liao et al.   BIOCHEMICAL ENGINEERING JOURNAL

A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome

(2010) Yanbin Hong et al.   BMC PLANT BIOLOGY

Mapping quantitative trait loci for seed size traits in soybean (Glycine max L. Merr.)

(2010) Yu Xu et al.   THEORETICAL AND APPLIED GENETICS

More genomic resources for less-studied crops

(2010) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species

(2009) Xuanqiang Liang et al.   BMC PLANT BIOLOGY

Identification of QTLs for pod and kernel traits in cultivated peanut by bulked segregant analysis

(2009) Michael Gomez Selvaraj et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

Unraveling the Complex Trait of Crop Yield With Quantitative Trait Loci Mapping in Brassica napus

(2009) J. Shi et al.   GENETICS

Molecular biogeographic study of recently described B- and A-genome Arachis species, also providing new insights into the origins of cultivated peanut

(2009) Mark D. Burow et al.   GENOME

The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.)

(2008) R. K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics