Identification of a novel anthocyanin synthesis pathway in the fungus Aspergillus sydowii H-1

Regulation of anthocyanin accumulation via MYB75/HAT1/TPL-mediated transcriptional repression

(2019) Ting Zheng et al.   PLoS Genetics

Regulation of UGT2A1 by miR-196a-5p and miR-196b-5p

(2019) Aimee K. Sutliff et al.   JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS

First demonstration that ascomycetous halophilic fungi (Aspergillus sydowii and Aspergillus destruens) are useful in xenobiotic mycoremediation under high salinity conditions

(2019) Deborah González-Abradelo et al.   BIORESOURCE TECHNOLOGY

miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes

(2019) Varsha Tirumalai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of Key Genes Involved in Potato Anthocyanin Biosynthesis Based on Genomics and Transcriptomics Data

(2019) Nie Tengkun et al.   Frontiers in Plant Science

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Biodegradation of caffeine by whole cells of tea-derived fungi Aspergillus sydowii, Aspergillus niger and optimization for caffeine degradation

(2018) Binxing Zhou et al.   BMC MICROBIOLOGY

Anthocyanin stabilization by chitosan-chondroitin sulfate polyelectrolyte complexation integrating catechin co-pigmentation

(2018) Chen Tan et al.   CARBOHYDRATE POLYMERS

Anthocyanins Accumulation and Molecular Analysis of Correlated Genes by Metabolome and Transcriptome in Green and Purple Asparaguses ( Asparagus Officinalis , L.)

(2018) Tingting Dong et al.   FOOD CHEMISTRY

Virus-Induced Gene Silencing of the Eggplant Chalcone Synthase Gene during Fruit Ripening Modifies Epidermal Cells and Gravitropism

(2018) Cuicui Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa

(2018) Guy Polturak et al.   Molecular Plant

Recent advances in understanding the anti-obesity activity of anthocyanins and their biosynthesis in microorganisms

(2018) Lianghua Xie et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis

(2018) Meng Li et al.   Frontiers in Plant Science

Nrf2 Is a Key Regulator on Puerarin Preventing Cardiac Fibrosis and Upregulating Metabolic Enzymes UGT1A1 in Rats

(2018) Shao-Ai Cai et al.   Frontiers in Pharmacology

Feasibility and transcriptomic analysis of betalain production by biomembrane surface fermentation of Penicillium novae-zelandiae

(2018) Hailei Wang et al.   AMB Express

Nontargeted Metabolomics for Phenolic and Polyhydroxy Compounds Profile of Pepper (Piper nigrum L.) Products Based on LC-MS/MS Analysis

(2018) Fenglin Gu et al.   MOLECULES

MYBA From Blueberry (Vaccinium Section Cyanococcus) Is a Subgroup 6 Type R2R3MYB Transcription Factor That Activates Anthocyanin Production

(2018) Blue J. Plunkett et al.   Frontiers in Plant Science

Processing methods with heat increases bioactive phenolic compounds and antioxidant activity in grape juices

(2018) Gildeilza Gomes Silva et al.   JOURNAL OF FOOD BIOCHEMISTRY

Malvidin attenuates pain and inflammation in rats with osteoarthritis by suppressing NF-κB signaling pathway

(2017) Teng Dai et al.   INFLAMMATION RESEARCH

Metabolic Effects of Berries with Structurally Diverse Anthocyanins

(2017) John Overall et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Evolution and genome architecture in fungal plant pathogens

(2017) Mareike Möller et al.   NATURE REVIEWS MICROBIOLOGY

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

NONCODEV5: a comprehensive annotation database for long non-coding RNAs

(2017) ShuangSang Fang et al.   NUCLEIC ACIDS RESEARCH

Red-purple flower color and delphinidin-type pigments in the flowers of Pueraria lobata (Leguminosae)

(2017) Fumi Tatsuzawa et al.   PHYTOCHEMISTRY

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

Dietary Anthocyanins against Obesity and Inflammation

(2017) Yoon-Mi Lee et al.   Nutrients

Red Wine Age Estimation by the Alteration of Its Color Parameters: Fourier Transform Infrared Spectroscopy as a Tool to Monitor Wine Maturation Time

(2017) M. Basalekou et al.   Journal of Analytical Methods in Chemistry

Cardioprotective Effects of Malvidin Against Isoproterenol-Induced Myocardial Infarction in Rats: A Mechanistic Study

(2017) Hui Wei et al.   MEDICAL SCIENCE MONITOR

Non-coding RNAs and Their Roles in Stress Response in Plants

(2017) Jingjing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Biodegradation of the Organophosphate Trichlorfon and Its Major Degradation Products by a Novel Aspergillus sydowii PA F-2

(2016) Jiang Tian et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Determination of Food Dyes in Vitamins by RP-HPLC

(2016) Monika Šuleková et al.   MOLECULES

RNAi down-regulation of cinnamate-4-hydroxylase increases artemisinin biosynthesis in Artemisia annua

(2016) Ritesh Kumar et al.   Scientific Reports

Biosynthesis and characterization of silver nanoparticles prepared from two novel natural precursors by facile thermal decomposition methods

(2016) Mojgan Goudarzi et al.   Scientific Reports

Health Benefits of Anthocyanins and Their Encapsulation for Potential Use in Food Systems: A Review

(2015) Basharat Yousuf et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Multiple functional roles of anthocyanins in plant-environment interactions

(2015) M. Landi et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Australian Dust Storm Associated with Extensive Aspergillus sydowii Fungal “Bloom” in Coastal Waters

(2014) Gustaaf Hallegraeff et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Biocatalysis and biotransformation of resveratrol in microorganisms

(2014) Yan-Zhen Mei et al.   BIOTECHNOLOGY LETTERS

PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme

(2014) Aimin Li et al.   BMC BIOINFORMATICS

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Biodegradation of methyl parathion by whole cells of marine-derived fungi Aspergillus sydowii and Penicillium decaturense

(2014) Natália Alvarenga et al.   CHEMOSPHERE

An epigenetic modifier enhances the production of anti-diabetic and anti-inflammatory sesquiterpenoids from Aspergillus sydowii

(2013) Yu-Ming Chung et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

On the classification of long non-coding RNAs

(2013) Lina Ma et al.   RNA Biology

Anti-oxidative analysis, and identification and quantification of anthocyanin pigments in different coloured rice

(2012) Xiao Qiong Chen et al.   FOOD CHEMISTRY

Proteomic Analysis Reveals an Aflatoxin-Triggered Immune Response in Cotyledons of Arachis hypogaea Infected with Aspergillus flavus

(2012) Zizhang Wang et al.   JOURNAL OF PROTEOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

cDNA cloning and expression pattern of Cinnamate-4-Hydroxylase in the Korean black raspberry

(2011) Myung-Hwa Baek et al.   BMB Reports

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Horizontal gene transfer in fungi

(2011) David A. Fitzpatrick   FEMS MICROBIOLOGY LETTERS

Prediction of red wine colour and phenolic parameters from the analysis of its grape extract

(2011) Sandra Fragoso et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

Sesquiterpene and Xanthone Derivatives from the Sea Fan-Derived FungusAspergillus sydowiiPSU-F154

(2011) Kongkiat Trisuwan et al.   JOURNAL OF NATURAL PRODUCTS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Quantitative determination of anthocyanins in three sweet cherry varieties using diffuse reflectance infrared Fourier transform spectroscopy

(2010) C.S. Pappas et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

(2009) Giovanni Emiliani et al.   Biology Direct

Presence of Aspergillus sydowii, a pathogen of gorgonian sea fans in the marine sponge Spongia obscura

(2009) Neta Ein-Gil et al.   ISME Journal

Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi

(2009) T. A. Richards et al.   PLANT CELL

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

Structure and function of enzymes involved in the biosynthesis of phenylpropanoids

(2008) J.-L. Ferrer et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY