The Connection and Disconnection Between Microbiome and Metabolome: A Critical Appraisal in Clinical Research

Metabolomics and Microbiomes as Potential Tools to Evaluate the Effects of the Mediterranean Diet

(2019) Qi Jin et al.   Nutrients

The neuroactive potential of the human gut microbiota in quality of life and depression

(2019) Mireia Valles-Colomer et al.   Nature Microbiology

MAGI: A method for metabolite, annotation, and gene integration

(2019) Onur Erbilgin et al.   ACS Chemical Biology

Microbes, metabolites, and the gut–lung axis

(2019) Anh Thu Dang et al.   Mucosal Immunology

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

The impact of skin care products on skin chemistry and microbiome dynamics

(2019) Amina Bouslimani et al.   BMC BIOLOGY

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

(2019) Himel Mallick et al.   Nature Communications

Erratum to: iMicrobe: Tools and data-driven discovery platform for the microbiome sciences

(2019) Ken Youens-Clark et al.   GigaScience

Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach

(2019) Dinesh Kumar Barupal et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

CE

(2019) Ruth Lebet et al.   AMERICAN JOURNAL OF NURSING

AMON: annotation of metabolite origins via networks to integrate microbiome and metabolome data

(2019) M. Shaffer et al.   BMC BIOINFORMATICS

Learning representations of microbe–metabolite interactions

(2019) James T. Morton et al.   NATURE METHODS

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies

(2019) Cecilia Noecker et al.   mSystems

A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database

(2018) Naama Karu et al.   ANALYTICA CHIMICA ACTA

Gut Microbiota-Produced Tryptamine Activates an Epithelial G-Protein-Coupled Receptor to Increase Colonic Secretion

(2018) Yogesh Bhattarai et al.   Cell Host & Microbe

Preanalytical Processing and Biobanking Procedures of Biological Samples for Metabolomics Research: A White Paper, Community Perspective (for “Precision Medicine and Pharmacometabolomics Task Group”—The Metabolomics Society Initiative)

(2018) Jennifer A. Kirwan et al.   CLINICAL CHEMISTRY

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis

(2018) Alexander Crits-Christoph et al.   NATURE

The fecal metabolome as a functional readout of the gut microbiome

(2018) Jonas Zierer et al.   NATURE GENETICS

How Can Omic Science be Improved?

(2018) Kai Simons   PROTEOMICS

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

(2018) Toby J. Wilkinson et al.   Frontiers in Microbiology

BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa–Function Relationships in Microbiome Data

(2018) Colin P. McNally et al.   Frontiers in Microbiology

COREMIC: a web-tool to search for a niche associated CORE MICrobiome

(2018) Richard R. Rodrigues et al.   PeerJ

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Establishing the Genomic Knowledge Matrix for Nursing Science

(2018) Mary Regan et al.   JOURNAL OF NURSING SCHOLARSHIP

Oral iron supplementation: Potential implications for the gut microbiome and metabolome in patients with CKD

(2017) Guus A. M. Kortman et al.   Hemodialysis International

Biological determinants of health: Genes, microbes, and metabolism exemplars of nursing science

(2017) Erin P. Ferranti et al.   NURSING OUTLOOK

Omics in Nursing Science

(2017) Janet D. Pierce et al.   NURSING RESEARCH

The microbial metabolite desaminotyrosine protects from influenza through type I interferon

(2017) Ashley L. Steed et al.   SCIENCE

Microbiome and metabolome data integration provides insight into health and disease

(2017) Michael Shaffer et al.   Translational Research

Metabolite exchange between microbiome members produces compounds that influence Drosophila behavior

(2017) Caleb N Fischer et al.   eLife

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Dark matter in host-microbiome metabolomics: Tackling the unknowns–A review

(2017) B.Y. Loulou Peisl et al.   ANALYTICA CHIMICA ACTA

High-Resolution Metabolomics

(2016) Shuzhao Li et al.   Biological Research for Nursing

The Microbiome and Cancer

(2016) Debra Lynch Kelly et al.   CANCER NURSING

Five-Year Bibliometric Review of Genomic Nursing Science Research

(2016) Janet K. Williams et al.   JOURNAL OF NURSING SCHOLARSHIP

BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies

(2016) Victor S. Pylro et al.   MICROBIAL ECOLOGY

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

(2016) Bashir Abdulkadir et al.   Neonatology

Trans-Omics: How To Reconstruct Biochemical Networks Across Multiple ‘Omic’ Layers

(2016) Katsuyuki Yugi et al.   TRENDS IN BIOTECHNOLOGY

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

(2016) Cecilia Noecker et al.   mSystems

Dysbiotic gut microbiome: A key element of Crohn's disease

(2015) Styrk Furnes Øyri et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

PhD programs in nursing in the United States: Visibility of American Association of Colleges of Nursing core curricular elements and emerging areas of science

(2015) Jean F. Wyman et al.   NURSING OUTLOOK

A Path Forward for Genomic Nursing Research

(2015) Lois A. Tully et al.   RESEARCH IN NURSING & HEALTH

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Dysbiosis gut microbiota associated with inflammation and impaired mucosal immune function in intestine of humans with non-alcoholic fatty liver disease

(2015) Weiwei Jiang et al.   Scientific Reports

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

(2015) Stephen Nayfach et al.   GENOME BIOLOGY

Metabolome of human gut microbiome is predictive of host dysbiosis

(2015) Peter E. Larsen et al.   GigaScience

Distinct signatures of host–microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet

(2014) Alesia Walker et al.   ISME Journal

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

(2013) C. E. Robertson et al.   BIOINFORMATICS

Stool Microbiome and Metabolome Differences between Colorectal Cancer Patients and Healthy Adults

(2013) Tiffany L. Weir et al.   PLoS One

The Gut Microbiome Modulates Colon Tumorigenesis

(2013) J. P. Zackular et al.   mBio

Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites

(2009) W. R. Wikoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA