Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach

Serum Metabolites and Cardiac Death in Patients on Hemodialysis

(2019) Jiun-Ruey Hu et al.   Clinical Journal of the American Society of Nephrology

A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium

(2019) Dinesh K. Barupal et al.   Metabolites

Acetaminophen (Paracetamol) Use Modifies the Sulfation of Sex Hormones

(2018) Isaac V. Cohen et al.   EBioMedicine

Trends in the application of high-resolution mass spectrometry for human biomonitoring: An analytical primer to studying the environmental chemical space of the human exposome

(2017) Syam S. Andra et al.   ENVIRONMENT INTERNATIONAL

The impact of ambient air pollution on the human blood metabolome

(2017) J.J. Vlaanderen et al.   ENVIRONMENTAL RESEARCH

Low vitamin B12 increases risk of gastric cancer: A prospective study of one-carbon metabolism nutrients and risk of upper gastrointestinal tract cancer

(2017) Eugenia H. Miranti et al.   INTERNATIONAL JOURNAL OF CANCER

Dimethylguanidino valeric acid is a marker of liver fat and predicts diabetes

(2017) John F. O’Sullivan et al.   JOURNAL OF CLINICAL INVESTIGATION

Bile acid quantification of 20 plasma metabolites identifies lithocholic acid as a putative biomarker in Alzheimer’s disease

(2017) Josef Marksteiner et al.   Metabolomics

A wellness study of 108 individuals using personal, dense, dynamic data clouds

(2017) Nathan D Price et al.   NATURE BIOTECHNOLOGY

Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites

(2017) Tao Long et al.   NATURE GENETICS

Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics

(2017) Zijuan Lai et al.   NATURE METHODS

LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes

(2017) Andres Cañada et al.   NUCLEIC ACIDS RESEARCH

HMDB 4.0: the human metabolome database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

Plasma Amino Acids During 8 Weeks of Overfeeding: Relation to Diet Body Composition and Fat Cell Size in the PROOF Study

(2017) George A. Bray et al.   Obesity

Chemical transformation of xenobiotics by the human gut microbiota

(2017) Nitzan Koppel et al.   SCIENCE

Homocysteine and Stroke Risk

(2017) Min Zhao et al.   STROKE

NutriChem 2.0: exploring the effect of plant-based foods on human health and drug efficacy

(2017) Yueqiong Ni et al.   Database-The Journal of Biological Databases and Curation

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

(2017) Ivana Blaženović et al.   Journal of Cheminformatics

Ozone Exposure Increases Circulating Stress Hormones and Lipid Metabolites in Humans

(2016) Desinia B. Miller et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

(2016) Hiroshi Tsugawa et al.   ANALYTICAL CHEMISTRY

An Informatics Approach to Evaluating Combined Chemical Exposures from Consumer Products: A Case Study of Asthma-Associated Chemicals and Potential Endocrine Disruptors

(2016) Henry A. Gabb et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Biomonitoring in the Era of the Exposome

(2016) Kristine K. Dennis et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Prioritizing Chemicals for Risk Assessment Using Chemoinformatics: Examples from the IARC Monographs on Pesticides

(2016) Neela Guha et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Individual variability in human blood metabolites identifies age-related differences

(2016) Romanas Chaleckis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

Polyphenol metabolome in human urine and its association with intake of polyphenol-rich foods across European countries

(2015) William MB Edmands et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Uses of NHANES Biomarker Data for Chemical Risk Assessment: Trends, Challenges, and Opportunities

(2015) Jon R. Sobus et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

4-Hydroxynonenal: A Superior Oxidative Biomarker Compared to Malondialdehyde and Carbonyl Content Induced by Carbon Tetrachloride in Rats

(2015) Dong Hyun Kim et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES

PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more

(2015) Yifeng Liu et al.   NUCLEIC ACIDS RESEARCH

N-lactoyl-amino acids are ubiquitous metabolites that originate from CNDP2-mediated reverse proteolysis of lactate and amino acids

(2015) Robert S. Jansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

(2014) Christopher Funk et al.   BMC BIOINFORMATICS

The Blood Exposome and Its Role in Discovering Causes of Disease

(2014) Stephen M. Rappaport et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra

(2014) Felicity Allen et al.   NUCLEIC ACIDS RESEARCH

New Biomarkers of Coffee Consumption Identified by the Non-Targeted Metabolomic Profiling of Cohort Study Subjects

(2014) Joseph A. Rothwell et al.   PLoS One

Human pharmacokinetics of xanthohumol, an antihyperglycemic flavonoid from hops

(2013) LeeCole Legette et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Metab2MeSH: annotating compounds with medical subject headings

(2012) Maureen A. Sartor et al.   BIOINFORMATICS

Event extraction across multiple levels of biological organization

(2012) Sampo Pyysalo et al.   BIOINFORMATICS

Molecular mechanisms underlying chemical liver injury

(2012) Xinsheng Gu et al.   EXPERT REVIEWS IN MOLECULAR MEDICINE

Subchronic Hepatotoxicity Evaluation of Hydrazobenzene in Fischer 344 Rats

(2012) Darol E. Dodd et al.   INTERNATIONAL JOURNAL OF TOXICOLOGY

Biomedical text mining and its applications in cancer research

(2012) Fei Zhu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Identification and assay of 3′-O-methyltaxifolin by UPLC–MS in rat plasma

(2012) Xiaodan Wang et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

The Human Serum Metabolome

(2011) Nikolaos Psychogios et al.   PLoS One

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports

(2010) G. Wohlgemuth et al.   BIOINFORMATICS

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

Assessment of disease named entity recognition on a corpus of annotated sentences

(2008) Antonio Jimeno et al.   BMC BIOINFORMATICS