Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae

RNA-Seq Reveals OTA-Related Gene Transcriptional Changes in Aspergillus carbonarius

(2016) Donato Gerin et al.   PLoS One

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

(2015) Isabelle Benoit et al.   Biotechnology for Biofuels

Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius

(2015) Geromy G. Moore et al.   BMC GENOMICS

Aspergillus steynii and Aspergillus westerdijkiae as potential risk of OTA contamination in food products in warm climates

(2015) Jessica Gil-Serna et al.   FOOD MICROBIOLOGY

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Toxic indole alkaloids avrainvillamide and stephacidin B produced by a biocide tolerant indoor mold Aspergillus westerdijkiae

(2015) Raimo Mikkola et al.   TOXICON

A new in vitro method to detect growth and ochratoxin A-producing ability of multiple fungal species commonly found in food commodities

(2014) M.L. Abarca et al.   FOOD MICROBIOLOGY

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

(2014) Eduardo Larriba et al.   FUNGAL GENETICS AND BIOLOGY

Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes

(2014) Johanna Rytioja et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fungal siderophore metabolism with a focus on Aspergillus fumigatus

(2014) Hubertus Haas   NATURAL PRODUCT REPORTS

Westerdijkin A, a new hydroxyphenylacetic acid derivative from deep sea fungusAspergillus westerdijkiaeSCSIO 05233

(2014) Mangaladoss Fredimoses et al.   NATURAL PRODUCT RESEARCH

Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati)

(2014) C.M. Visagie et al.   STUDIES IN MYCOLOGY

Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus

(2014) Philipp Wiemann et al.   Frontiers in Microbiology

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

(2013) Diane O Inglis et al.   BMC MICROBIOLOGY

Identification of Genes Differentially Expressed Between Ochratoxin-Producing and Non-Producing Strains of Aspergillus westerdijkiae

(2013) Daniele Sartori et al.   INDIAN JOURNAL OF MICROBIOLOGY

Alkaloids from the Deep-Sea-Derived Fungus Aspergillus westerdijkiae DFFSCS013

(2013) Jiang Peng et al.   JOURNAL OF NATURAL PRODUCTS

A Nonribosomal Peptide Synthetase-Derived Iron(III) Complex from the Pathogenic Fungus Aspergillus fumigatus

(2013) Wen-Bing Yin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes

(2012) Venkatesh Moktali et al.   BMC GENOMICS

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

(2012) Marie Couturier et al.   BMC GENOMICS

Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

(2012) Marina Marcet-Houben et al.   BMC GENOMICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of the biosynthetic systems for fungal bicyclo[2.2.2]diazaoctane indole alkaloids: the (+)/(−)-notoamide, paraherquamide and malbrancheamide pathways

(2012) Shengying Li et al.   MedChemComm

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Fungal enzyme sets for plant polysaccharide degradation

(2011) Joost van den Brink et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Mechanisms involved in reduction of ochratoxin A produced by Aspergillus westerdijkiae using Debaryomyces hansenii CYC 1244

(2011) Jéssica Gil-Serna et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Contribution of Proteomics to the Study of Plant Pathogenic Fungi

(2011) Raquel Gonzalez-Fernandez et al.   JOURNAL OF PROTEOME RESEARCH

Self versus non-self: fungal cell wall degradation in Trichoderma

(2011) S. Gruber et al.   MICROBIOLOGY-SGM

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

(2011) Christopher A. Desjardins et al.   PLoS Genetics

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

(2011) Qiang Gao et al.   PLoS Genetics

Recent advancements in the biosynthetic mechanisms for polyketide-derived mycotoxins

(2010) Justin Huffman et al.   BIOPOLYMERS

The CAZyome of Phytophthora spp.: A comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora

(2010) Manuel D Ospina-Giraldo et al.   BMC GENOMICS

SMURF: Genomic mapping of fungal secondary metabolite clusters

(2010) Nora Khaldi et al.   FUNGAL GENETICS AND BIOLOGY

Genome-Based Characterization of Two Prenylation Steps in the Assembly of the Stephacidin and Notoamide Anticancer Agents in a Marine-DerivedAspergillussp.

(2010) Yousong Ding et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

Identification and Purification of Metalloprotease from Dry Grass Pea (Lathyrus sativus L.) Seeds

(2009) Vadde Ramakrishna et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Cloning and characterization of novel methylsalicylic acid synthase gene involved in the biosynthesis of isoasperlactone and asperlactone in Aspergillus westerdijkiae

(2009) Nafees Bacha et al.   FUNGAL GENETICS AND BIOLOGY

Ochratoxigenic Aspergillus species on grapes from Chilean vineyards and Aspergillus threshold levels on grapes

(2009) Gonzalo A. Díaz et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Ochratoxin A production by Aspergillus westerdijkiae in orange fruit and juice

(2009) Andreana Marino et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

ITS-based detection and quantification of Aspergillus ochraceus and Aspergillus westerdijkiae in grapes and green coffee beans by real-time quantitative PCR

(2009) Jéssica Gil-Serna et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Fungal LysM effectors: extinguishers of host immunity?

(2009) Ronnie de Jonge et al.   TRENDS IN MICROBIOLOGY

Fungal cytochrome P450 database

(2008) Jongsun Park et al.   BMC GENOMICS

Aspergillus westerdijkiae polyketide synthase gene “aoks1” is involved in the biosynthesis of ochratoxin A

(2008) N BACHA et al.   FUNGAL GENETICS AND BIOLOGY

Phylogenetic analysis of Aspergillus species using DNA sequences from four loci

(2008) S. W. Peterson   MYCOLOGIA

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

The MEROPS batch BLAST: A tool to detect peptidases and their non-peptidase homologues in a genome

(2007) Neil D. Rawlings et al.   BIOCHIMIE