Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Systematic Identification of Long Noncoding RNAs in Immature and Mature Porcine Testes1

(2016) Maoliang Ran et al.   BIOLOGY OF REPRODUCTION

Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

(2016) Hangxing Ren et al.   BMC GENOMICS

Systematic Characterization of Long Noncoding RNAs Reveals the Contrasting Coordination ofCis- andTrans-Molecular Regulation in Human Fetal and Adult HeartsCLINICAL PERSPECTIVE

(2016) Chunjiang He et al.   Circulation-Cardiovascular Genetics

In silico prediction of long intergenic non-coding RNAs in sheep

(2016) Mohammad Reza Bakhtiarizadeh et al.   GENOME

Systematic Characterization of Long Noncoding RNAs Reveals the Contrasting Coordination ofCis- andTrans-Molecular Regulation in Human Fetal and Adult HeartsCLINICAL PERSPECTIVE

(2016) Chunjiang He et al.   Circulation-Cardiovascular Genetics

Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium

(2016) Yueying Wang et al.   Scientific Reports

Global transcriptional profiling of longissimus thoracis muscle tissue in fetal and juvenile domestic goat using RNA sequencing

(2015) Y. H. Wang et al.   ANIMAL GENETICS

Dynamic transcriptome profiles of skeletal muscle tissue across 11 developmental stages for both Tongcheng and Yorkshire pigs

(2015) Yuqiang Zhao et al.   BMC GENOMICS

LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration

(2015) Lijun Wang et al.   CELL RESEARCH

A Long Non-coding RNA, LncMyoD, Regulates Skeletal Muscle Differentiation by Blocking IMP2-Mediated mRNA Translation

(2015) Chenguang Gong et al.   DEVELOPMENTAL CELL

Malat1 regulates serum response factor through miR-133 as a competing endogenous RNA in myogenesis

(2015) Xiaorui Han et al.   FASEB JOURNAL

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

Long non-coding RNAs as regulators of the endocrine system

(2015) Marko Knoll et al.   Nature Reviews Endocrinology

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Junk DNA and the long non-coding RNA twist in cancer genetics

(2015) H Ling et al.   ONCOGENE

Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain

(2015) Loyal A. Goff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long noncoding RNAs in organogenesis: making the difference

(2015) Phillip Grote et al.   TRENDS IN GENETICS

A catalogue of novel bovine long noncoding RNA across 18 tissues

(2015) Lambros T. Koufariotis et al.   PLoS One

Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development

(2015) Weimin Zhao et al.   Scientific Reports

Regulation of Transcription by Long Noncoding RNAs

(2014) Roberto Bonasio et al.   Annual Review of Genetics

The functional role of long non-coding RNAs and epigenetics

(2014) Jinneng Cao   BIOLOGICAL PROCEDURES ONLINE

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing

(2014) Coline Billerey et al.   BMC GENOMICS

The Role of Long Noncoding RNAs in the Epigenetic Control of Gene Expression

(2014) Mariangela Morlando et al.   ChemMedChem

Gene Regulatory Networks and Transcriptional Mechanisms that Control Myogenesis

(2014) Margaret Buckingham et al.   DEVELOPMENTAL CELL

Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs

(2014) S. Ounzain et al.   EUROPEAN HEART JOURNAL

The H19 long noncoding RNA gives rise to microRNAs miR-675-3p and miR-675-5p to promote skeletal muscle differentiation and regeneration

(2014) B. K. Dey et al.   GENES & DEVELOPMENT

MEF2 Transcription Factors Regulate Distinct Gene Programs in Mammalian Skeletal Muscle Differentiation

(2014) Nelsa L. Estrella et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rôle des longs ARN non codants dans le développement normal et pathologique

(2014) Ève-Lyne Mathieu et al.   M S-MEDECINE SCIENCES

Transcriptomic dissection of myogenic differentiation signature in caprine by RNA-Seq

(2014) Ajai K. Tripathi et al.   MECHANISMS OF DEVELOPMENT

Novel Long Noncoding RNAs (lncRNAs) in Myogenesis: amiR-31Overlapping lncRNA Transcript Controls Myoblast Differentiation

(2014) Monica Ballarino et al.   MOLECULAR AND CELLULAR BIOLOGY

MUNC, a Long Noncoding RNA That Facilitates the Function of MyoD in Skeletal Myogenesis

(2014) Adam C. Mueller et al.   MOLECULAR AND CELLULAR BIOLOGY

Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer

(2014) Xiang-hua Liu et al.   Molecular Cancer

A Feedforward Regulatory Loop between HuR and the Long Noncoding RNA linc-MD1 Controls Early Phases of Myogenesis

(2014) Ivano Legnini et al.   MOLECULAR CELL

Identification and characterization of long intergenic non-coding RNAs related to mouse liver development

(2014) Jie Lv et al.   MOLECULAR GENETICS AND GENOMICS

Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development

(2014) Jie Lv et al.   MOLECULAR GENETICS AND GENOMICS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Identification and Profiling of microRNAs and Their Target Genes from Developing Caprine Skeletal Muscle

(2014) Yanhong Wang et al.   PLoS One

Transcriptional regulatory functions of nuclear long noncoding RNAs

(2014) Keith W. Vance et al.   TRENDS IN GENETICS

Sequential expression of long noncoding RNA as mRNA gene expression in specific stages of mouse spermatogenesis

(2014) Meng Liang et al.   Scientific Reports

Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis

(2013) Leina Lu et al.   EMBO JOURNAL

Dial M(RF) for myogenesis

(2013) Natalia Moncaut et al.   FEBS Journal

Long Noncoding RNAs Expression Profile of the Developing Mouse Heart

(2013) Jin Gai Zhu et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

(2013) Kambiz Mousavi et al.   MOLECULAR CELL

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

Structure and function of long noncoding RNAs in epigenetic regulation

(2013) Tim R Mercer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Identification and Characterization of Genes Related to the Development of Skeletal Muscle in the Hainan Black Goat

(2012) Tie Shan XU et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Transcriptional mechanisms regulating skeletal muscle differentiation, growth and homeostasis

(2011) Thomas Braun et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

Genetic regulation of skeletal muscle development

(2010) Keren Bismuth et al.   EXPERIMENTAL CELL RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY