Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development
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Title
Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development
Authors
Keywords
Long non-coding RNAs, Pre-implantation embryonic development, Mouse, Single-cell sequencing, RNA sequencing
Journal
MOLECULAR GENETICS AND GENOMICS
Volume 290, Issue 2, Pages 685-697
Publisher
Springer Nature
Online
2014-12-02
DOI
10.1007/s00438-014-0952-z
References
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Note: Only part of the references are listed.- iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
- (2016) Kun Sun et al. BMC GENOMICS
- Expression analysis of AK003491, an imprinted noncoding RNA, during mouse development
- (2015) Tie-Bo Zeng et al. GENES & GENETIC SYSTEMS
- MetaImprint: an information repository of mammalian imprinted genes
- (2014) Y. Wei et al. DEVELOPMENT
- Identification and characterization of long intergenic non-coding RNAs related to mouse liver development
- (2014) Jie Lv et al. MOLECULAR GENETICS AND GENOMICS
- The evolution of lncRNA repertoires and expression patterns in tetrapods
- (2014) Anamaria Necsulea et al. NATURE
- Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
- (2014) Q. Deng et al. SCIENCE
- DevMouse, the mouse developmental methylome database and analysis tools
- (2014) H. Liu et al. Database-The Journal of Biological Databases and Curation
- Embryonic DNA methylation: insights from the genomics era
- (2013) O. Bogdanovi et al. Briefings in Functional Genomics
- lincRNAs: Genomics, Evolution, and Mechanisms
- (2013) Igor Ulitsky et al. CELL
- Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
- (2013) Ehsan Habibi et al. Cell Stem Cell
- The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse
- (2013) Phillip Grote et al. DEVELOPMENTAL CELL
- Long Noncoding RNAs: Past, Present, and Future
- (2013) J. T. Y. Kung et al. GENETICS
- Expression and imprinting analysis of AK044800, a transcript from the Dlk1-Dio3 imprinted gene cluster during mouse embryogenesis
- (2013) Zhengbin Han et al. MOLECULES AND CELLS
- Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
- (2013) Zhigang Xue et al. NATURE
- Zebrafish early methylomes
- (2013) Hannah Stower NATURE REVIEWS GENETICS
- Single-cell sequencing-based technologies will revolutionize whole-organism science
- (2013) Ehud Shapiro et al. NATURE REVIEWS GENETICS
- RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
- (2013) Stephane E. Castel et al. NATURE REVIEWS GENETICS
- Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
- (2013) Liying Yan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features
- (2013) Jie Lv et al. NUCLEIC ACIDS RESEARCH
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Identification and Characterization of Long Non-Coding RNAs Related to Mouse Embryonic Brain Development from Available Transcriptomic Data
- (2013) Jie Lv et al. PLoS One
- Comprehensive Characterization of 10,571 Mouse Large Intergenic Noncoding RNAs from Whole Transcriptome Sequencing
- (2013) Haitao Luo et al. PLoS One
- Single-Cell DNA-Methylation Analysis Reveals Epigenetic Chimerism in Preimplantation Embryos
- (2013) C. Lorthongpanich et al. SCIENCE
- The Vast, Conserved Mammalian lincRNome
- (2013) David Managadze et al. PLoS Computational Biology
- Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
- (2013) Aurélie Kapusta et al. PLoS Genetics
- RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
- (2012) M. H. Tan et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- A survey of tissue-specific genomic imprinting in mammals
- (2012) Adam R. Prickett et al. MOLECULAR GENETICS AND GENOMICS
- A unique regulatory phase of DNA methylation in the early mammalian embryo
- (2012) Zachary D. Smith et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- The UCSC Genome Browser database: extensions and updates 2013
- (2012) Laurence R. Meyer et al. NUCLEIC ACIDS RESEARCH
- Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci
- (2012) Satish Sati et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2013
- (2012) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Identification and Comparative Analysis of ncRNAs in Human, Mouse and Zebrafish Indicate a Conserved Role in Regulation of Genes Expressed in Brain
- (2012) Zhipeng Qu et al. PLoS One
- Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing
- (2012) P. A. Latos et al. SCIENCE
- An encyclopedia of mouse DNA elements (Mouse ENCODE)
- (2012) et al. GENOME BIOLOGY
- Transposable elements reveal a stem cell-specific class of long noncoding RNAs
- (2012) David Kelley et al. GENOME BIOLOGY
- Expression of macro non-coding RNAs Meg8 and Irm in mouse embryonic development
- (2011) Tiantian Gu et al. ACTA HISTOCHEMICA
- Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution
- (2011) Igor Ulitsky et al. CELL
- A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
- (2011) Marcella Cesana et al. CELL
- Transcript clearance during the maternal-to-zygotic transition
- (2011) Claudia B Walser et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- (2011) A. Pauli et al. GENOME RESEARCH
- Spatiotemporal expression pattern of Mirg, an imprinted non-coding gene, during mouse embryogenesis
- (2011) Zhengbin Han et al. JOURNAL OF MOLECULAR HISTOLOGY
- Expression of non-coding RNA AB063319 derived from Rian gene during mouse development
- (2011) Tiantian Gu et al. JOURNAL OF MOLECULAR HISTOLOGY
- Molecular Mechanisms of Long Noncoding RNAs
- (2011) Kevin C. Wang et al. MOLECULAR CELL
- lincRNAs act in the circuitry controlling pluripotency and differentiation
- (2011) Mitchell Guttman et al. NATURE
- Non-coding RNAs in human disease
- (2011) Manel Esteller NATURE REVIEWS GENETICS
- Non-coding RNAs as regulators of embryogenesis
- (2011) Andrea Pauli et al. NATURE REVIEWS GENETICS
- QDMR: a quantitative method for identification of differentially methylated regions by entropy
- (2011) Yan Zhang et al. NUCLEIC ACIDS RESEARCH
- NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
- (2011) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- Database resources of the National Center for Biotechnology Information
- (2011) E. W. Sayers et al. NUCLEIC ACIDS RESEARCH
- Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species
- (2010) D. Xie et al. GENOME RESEARCH
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- A comparative genome analysis of gene expression reveals different regulatory mechanisms between mouse and human embryo pre-implantation development
- (2010) Kan He et al. Reproductive Biology and Endocrinology
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- CEAS: cis-regulatory element annotation system
- (2009) Hyunjin Shin et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
- (2009) Jessica Severin et al. GENOME BIOLOGY
- The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin
- (2008) T. Nagano et al. SCIENCE
- Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities
- (2008) Marcel E. Dinger et al. PLoS Computational Biology
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