Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium

Differential Gene Expression in Uterine Endometrium During Implantation in Pigs1

(2015) Xiao Chen et al.   BIOLOGY OF REPRODUCTION

Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin

(2015) Lam C Tsoi et al.   GENOME BIOLOGY

Mechanisms for the Establishment of Pregnancy in the Pig

(2015) AJ Ziecik et al.   REPRODUCTION IN DOMESTIC ANIMALS

Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development

(2015) Weimin Zhao et al.   Scientific Reports

Endometrial gene expression profiling in pregnant Meishan and Yorkshire pigs on day 12 of gestation

(2014) Ting Gu et al.   BMC GENOMICS

Global gene expression profiling of porcine endometria on Days 12 and 16 of the estrous cycle and pregnancy

(2014) Jolanta Kiewisz et al.   THERIOGENOLOGY

Transcriptome Changes in the Porcine Endometrium During the Preattachment Phase1

(2013) Anastazia Samborski et al.   BIOLOGY OF REPRODUCTION

Deep Sequencing of the Porcine Endometrial Transcriptome on Day 14 of Pregnancy1

(2013) Anastazia Samborski et al.   BIOLOGY OF REPRODUCTION

Differential gene expression in the endometrium on gestation day 12 provides insight into sow prolificacy

(2013) Hao Zhang et al.   BMC GENOMICS

Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing

(2013) Rosemarie Weikard et al.   BMC GENOMICS

Analysis of legumain and cystatin 6 expression at the maternal-fetal interface in pigs

(2013) Jangsoo Shim et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

(2013) A. A. Sigova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of energy balance on the antimicrobial peptides S100A8 and S100A9 in the endometrium of the post-partum dairy cow

(2013) Theerawat Swangchan-Uthai et al.   REPRODUCTION

Transcriptomic analysis of the porcine endometrium during early pregnancy and the estrous cycle

(2013) Anita Franczak et al.   Reproductive Biology

Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs

(2013) Ana C Marques et al.   GENOME BIOLOGY

Microarray Analysis of Gene Expression in the Uterine Endometrium during the Implantation Period in Pigs

(2012) Mingoo Kim et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Suppression of progenitor differentiation requires the long noncoding RNA ANCR

(2012) M. Kretz et al.   GENES & DEVELOPMENT

Control of somatic tissue differentiation by the long non-coding RNA TINCR

(2012) Markus Kretz et al.   NATURE

Bovine ncRNAs Are Abundant, Primarily Intergenic, Conserved and Associated with Regulatory Genes

(2012) Zhipeng Qu et al.   PLoS One

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Divergent transcription: A new feature of active promoters

(2011) Amy C. Seila et al.   CELL CYCLE

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

(2011) A. Pauli et al.   GENOME RESEARCH

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

(2011) John R Prensner et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Novel insights into the mechanisms of pregnancy establishment: regulation of prostaglandin synthesis and signaling in the pig

(2011) Agnieszka Waclawik   REPRODUCTION

Differential Endometrial Gene Expression in Pregnant and Nonpregnant Sows1

(2010) Esben Østrup et al.   BIOLOGY OF REPRODUCTION

Forkhead Transcription Factor FOXO1 is a Direct Target of Progestin to Inhibit Endometrial Epithelial Cell Growth

(2010) S. Kyo et al.   CLINICAL CANCER RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

(2010) Mitchell Guttman et al.   NATURE BIOTECHNOLOGY

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

S100A8 and S100A9 are novel nuclear factor kappa B target genes during malignant progression of murine and human liver carcinogenesis

(2009) Julia Németh et al.   HEPATOLOGY

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

Divergent Transcription from Active Promoters

(2008) Amy C. Seila et al.   SCIENCE

RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters

(2008) Pascal Preker et al.   SCIENCE

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

(2008) Leighton J. Core et al.   SCIENCE