Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet

Genome-Wide Identification and Analysis of Drought-Responsive Genes and MicroRNAs in Tobacco

(2015) Fuqiang Yin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Role of microRNAs in plant drought tolerance

(2015) Jannatul Ferdous et al.   PLANT BIOTECHNOLOGY JOURNAL

MicroRNA167-Directed Regulation of the Auxin Response FactorsGmARF8aandGmARF8bIs Required for Soybean Nodulation and Lateral Root Development

(2015) Youning Wang et al.   PLANT PHYSIOLOGY

Dehydration-responsive miRNAs in foxtail millet: genome-wide identification, characterization and expression profiling

(2015) Amita Yadav et al.   PLANTA

C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses

(2014) Mehanathan Muthamilarasan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Bioinformatic identification and experimental validation of miRNAs from foxtail millet (Setaria italica)

(2014) Jun Han et al.   GENE

An ABA-responsive DRE-binding protein gene from Setaria italica, SiARDP, the target gene of SiAREB, plays a critical role under drought stress

(2014) Cong Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice

(2014) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions

(2014) Michael Hackenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis

(2014) Cong-Ying Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database

(2014) Yusuf Khan et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Mapping of Quantitative Trait Locus (QTLs) that Contribute to Germination and Early Seedling Drought Tolerance in the Interspecific Cross Setaria italica×Setaria viridis

(2014) Lufeng Qie et al.   PLoS One

Sulfate transporters in the plant’s response to drought and salinity: regulation and possible functions

(2014) Karine Gallardo et al.   Frontiers in Plant Science

The complex transcriptional landscape of the anucleate human platelet

(2013) Paul F Bray et al.   BMC GENOMICS

Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis

(2013) Peng Shuai et al.   BMC GENOMICS

The bHLH transcription factor SPATULA regulates root growth by controlling the size of the root meristem

(2013) Srilakshmi Makkena et al.   BMC PLANT BIOLOGY

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of rice microRNAs in abiotic stress responses

(2013) Dong-Hoon Jeong et al.   JOURNAL OF PLANT BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

(2013) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass

(2013) M. Zhou et al.   PLANT PHYSIOLOGY

Identification and Comparative Analysis of Cadmium Tolerance-Associated miRNAs and Their Targets in Two Soybean Genotypes

(2013) Xiaolong Fang et al.   PLoS One

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

Characterization of microRNAs expression during maize seed development

(2012) Mingming Kang et al.   BMC GENOMICS

A plant microRNA regulates the adaptation of roots to drought stress

(2012) Hao Chen et al.   FEBS LETTERS

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Haplotyping, linkage mapping and expression analysis of barley genes regulated by terminal drought stress influencing seed quality

(2011) Sebastian Worch et al.   BMC PLANT BIOLOGY

Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes

(2011) Blanca E Barrera-Figueroa et al.   BMC PLANT BIOLOGY

Gene set analysis of genome-wide association studies: Methodological issues and perspectives

(2011) Lily Wang et al.   GENOMICS

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

(2011) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Comparative transcriptome analysis of differentially expressed genes in foxtail millet ( Setaria italica L.) during dehydration stress

(2010) Charu Lata et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of a PLDα1 gene from Setaria italica enhances the sensitivity of Arabidopsis to abscisic acid and improves its drought tolerance

(2010) Yunling Peng et al.   PLANT CELL REPORTS

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

(2009) Qing Liu et al.   FEBS LETTERS

Identification of novel stress-regulated microRNAs from Oryza sativa L.

(2009) Xinyu Jian et al.   GENOMICS

Differentially Expressed miRNAs Potentially Involved in the Regulation of Defense Mechanism to Drought Stress in Maize Seedlings

(2009) Liya Wei et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs

(2009) ALEJANDRA A. COVARRUBIAS et al.   PLANT CELL AND ENVIRONMENT

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

Bioinformatic analysis of the CLE signaling peptide family

(2008) Karsten Oelkers et al.   BMC PLANT BIOLOGY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

(2008) Thomas Degenkolbe et al.   PLANT MOLECULAR BIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA