Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database

Genome-Wide Investigation and Expression Analyses of WD40 Protein Family in the Model Plant Foxtail Millet (Setaria italica L.)

(2014) Awdhesh Kumar Mishra et al.   PLoS One

Genome-Wide Development and Use of Microsatellite Markers for Large-Scale Genotyping Applications in Foxtail Millet [Setaria italica (L.)]

(2013) G. Pandey et al.   DNA RESEARCH

Setaria genome sequencing: an overview

(2013) Charu Lata et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Reference genes for quantitative real-time PCR analysis in the model plant foxtail millet (Setaria italica L.) subjected to abiotic stress conditions

(2013) Karunesh Kumar et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.)

(2013) Swati Puranik et al.   PLoS One

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses

(2012) Charu Lata et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Novel miRNAs in the control of arsenite levels in rice

(2012) Qingpo Liu   FUNCTIONAL & INTEGRATIVE GENOMICS

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Identification of novel maize miRNAs by measuring the precision of precursor processing

(2011) Yinping Jiao et al.   BMC PLANT BIOLOGY

Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)]

(2011) Charu Lata et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress

(2010) Sujay Paul et al.   PLANT CELL TISSUE AND ORGAN CULTURE

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

CMap 1.01: a comparative mapping application for the Internet

(2009) K. Youens-Clark et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress

(2009) Catalina Arenas-Huertero et al.   PLANT MOLECULAR BIOLOGY

Foxtail Millet: A Sequence-Driven Grass Model System

(2009) A. N. Doust et al.   PLANT PHYSIOLOGY

Identification of cold-inducible microRNAs in plants by transcriptome analysis

(2008) X ZHOU et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

In silico identification of conserved microRNAs in large number of diverse plant species

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA