Identification and Expression Analysis of the NAC Gene Family in Coffea canephora

Cold acclimation by the CBF–COR pathway in a changing climate: Lessons from Arabidopsis thaliana

(2019) Yukun Liu et al.   PLANT CELL REPORTS

Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum)

(2019) Moyang Liu et al.   BMC GENOMICS

Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

(2019) Xin Gong et al.   BMC PLANT BIOLOGY

NAC-type transcription factors regulate accumulation of starch and protein in maize seeds

(2019) Zhiyong Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Identification of WRKY Genes and Their Response to Cold Stress in Coffea canephora

(2019) Xiangshu Dong et al.   Forests

Genome-Wide Analyses of the NAC Transcription Factor Gene Family in Pepper (Capsicum annuum L.): Chromosome Location, Phylogeny, Structure, Expression Patterns, Cis-Elements in the Promoter, and Interaction Network

(2018) Weiping Diao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Global insights of protein responses to cold stress in plants: Signaling, defence, and degradation

(2018) Seyyedeh-Sanam Kazemi-Shahandashti et al.   JOURNAL OF PLANT PHYSIOLOGY

An apple NAC transcription factor negatively regulates cold tolerance via CBF-dependent pathway

(2018) Jian-Ping An et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria × ananassa fruits

(2018) Enriqueta Moyano et al.   PLoS One

Stress cross-response of the antioxidative system promoted by superimposed drought and cold conditions in Coffea spp.

(2018) José C. Ramalho et al.   PLoS One

Alternative Splicing Control of Abiotic Stress Responses

(2018) Tom Laloum et al.   TRENDS IN PLANT SCIENCE

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L

(2018) Gustavo C. Sant’Ana et al.   Scientific Reports

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants

(2018) Emiko Murozuka et al.   PLoS One

NAC Family Transcription Factors in Tobacco and Their Potential Role in Regulating Leaf Senescence

(2018) Wei Li et al.   Frontiers in Plant Science

Genome-Wide Analysis of the NAC Transcription Factor Gene Family Reveals Differential Expression Patterns and Cold-Stress Responses in the Woody Plant Prunus mume

(2018) Xiaokang Zhuo et al.   Genes

Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants

(2017) Xudong Shang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat

(2017) Philippa Borrill et al.   G3-Genes Genomes Genetics

A Novel NAC Transcription Factor, PbeNAC1, of Pyrus betulifolia Confers Cold and Drought Tolerance via Interacting with PbeDREBs and Activating the Expression of Stress-Responsive Genes

(2017) Cong Jin et al.   Frontiers in Plant Science

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance

(2016) Lei Huang et al.   BMC PLANT BIOLOGY

Advances in genomics for the improvement of quality in coffee

(2016) Hue TM Tran et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy

(2016) Min Chen et al.   MOLECULAR GENETICS AND GENOMICS

Influence of genotype and environment on coffee quality

(2016) Bing Cheng et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Global Expressions Landscape of NAC Transcription Factor Family and Their Responses to Abiotic Stresses in Citrullus lanatus

(2016) Xiaolong Lv et al.   Scientific Reports

Transcriptome Response Mediated by Cold Stress in Lotus japonicus

(2016) Pablo I. Calzadilla et al.   Frontiers in Plant Science

Three Rice NAC Transcription Factors Heteromerize and Are Associated with Seed Size

(2016) Iny Elizebeth Mathew et al.   Frontiers in Plant Science

Mechanisms and Regulation of Alternative Pre-mRNA Splicing

(2015) Yeon Lee et al.   Annual Review of Biochemistry

Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors

(2015) Xianjun Peng et al.   BMC PLANT BIOLOGY

Galactinol synthase transcriptional profile in two genotypes of Coffea canephora with contrasting tolerance to drought

(2015) Tiago Benedito Dos Santos et al.   GENETICS AND MOLECULAR BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis

(2015) Xuanwen Yang et al.   PLANT CELL REPORTS

Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava

(2015) Wei Hu et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Banana fruit NAC transcription factor MaNAC1 is a direct target of MaICE1 and involved in cold stress through interacting with MaCBF1

(2014) WEI SHAN et al.   PLANT CELL AND ENVIRONMENT

Citrullus colocynthis NAC transcription factors CcNAC1 and CcNAC2 are involved in light and auxin signaling

(2014) Zhuoyu Wang et al.   PLANT CELL REPORTS

A novel NAC transcription factor from Suaeda liaotungensis K. enhanced transgenic Arabidopsis drought, salt, and cold stress tolerance

(2014) Xiao-lan Li et al.   PLANT CELL REPORTS

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Cold impact and acclimation response of Coffea spp. plants

(2014) J. C. Ramalho et al.   Theoretical and Experimental Plant Physiology

Two NAC transcription factors from Citrullus colocynthis, CcNAC1, CcNAC2 implicated in multiple stress responses

(2013) Zhuoyu Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

New coffee (Coffea arabica) genotypes derived from Coffea canephora exhibiting high levels of resistance to leaf rust and Ceratocystis canker

(2013) Bertha Lucía Castro Caicedo et al.   Tropical Plant Pathology

Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa

(2012) Ruibo Hu et al.   BMC PLANT BIOLOGY

TaNAC2, a NAC-type wheat transcription factor conferring enhanced multiple abiotic stress tolerances in Arabidopsis

(2012) Xinguo Mao et al.   JOURNAL OF EXPERIMENTAL BOTANY

A maize stress-responsive NAC transcription factor, ZmSNAC1, confers enhanced tolerance to dehydration in transgenic Arabidopsis

(2012) Min Lu et al.   PLANT CELL REPORTS

Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera

(2012) Nian Wang et al.   PLANT CELL REPORTS

Overexpression of a novel chrysanthemum NAC transcription factor gene enhances salt tolerance in tobacco

(2011) Qing-Lin Liu et al.   BIOTECHNOLOGY LETTERS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Molecular characterization and functional analysis of the  -galactosidase gene during Coffea arabica (L.) fruit development

(2011) S. A. Figueiredo et al.   JOURNAL OF EXPERIMENTAL BOTANY

The impact of cold on photosynthesis in genotypes of Coffea spp.—Photosystem sensitivity, photoprotective mechanisms and gene expression

(2011) P. Batista-Santos et al.   JOURNAL OF PLANT PHYSIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

TheArabidopsisNAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via theCOR/RDGenes

(2011) So-Dam Yang et al.   PLANT CELL

Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants

(2011) Yu-Jun Hao et al.   PLANT JOURNAL

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of a NAC transcription factor enhances rice drought and salt tolerance

(2009) Xingnan Zheng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TheArabidopsis thalianaNAC transcription factor family: structure–function relationships and determinants of ANAC019 stress signalling

(2009) Michael K. Jensen et al.   BIOCHEMICAL JOURNAL

Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study

(2009) Thierry Joët et al.   NEW PHYTOLOGIST

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor

(2009) Raul A. Sperotto et al.   PLANTA

Differential regulation of grain sucrose accumulation and metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) revealed through gene expression and enzyme activity analysis

(2008) Isabelle Privat et al.   NEW PHYTOLOGIST

NAC Family Proteins NARS1/NAC2 and NARS2/NAM in the Outer Integument Regulate Embryogenesis in Arabidopsis

(2008) T. Kunieda et al.   PLANT CELL

Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towardsBlumeria graminisf. sp.hordeiin Arabidopsis

(2008) Michael K. Jensen et al.   PLANT JOURNAL

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

(2008) Honghong Hu et al.   PLANT MOLECULAR BIOLOGY

A guardian of grasses: Specific origin and conservation of a unique disease-resistance gene in the grass lineage

(2008) A. Sindhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA