Advances in genomics for the improvement of quality in coffee

Next generation variety development for sustainable production of arabica coffee (Coffea arabica L.): a review

(2015) Herbert van der Vossen et al.   EUPHYTICA

Perspectives on the potential impacts of climate changes on coffee plant and bean quality

(2015) Catia Santos et al.   Emirates Journal of Food and Agriculture

Conversion of nicotinic acid to trigonelline is catalyzed by N-methyltransferase belonged to motif B′ methyltransferase family in Coffea arabica

(2014) Kouichi Mizuno et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Molecular characterization of arabica and Conilon coffee plants genotypes by SSR and ISSR markers

(2014) Ludymila Brandão Motta et al.   BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY

Complexity of coffee flavor: A compositional and sensory perspective

(2014) Wenny B. Sunarharum et al.   FOOD RESEARCH INTERNATIONAL

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora

(2014) Thierry Leroy et al.   GENETICA

The coffee genome hub: a resource for coffee genomes

(2014) Alexis Dereeper et al.   NUCLEIC ACIDS RESEARCH

Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

(2014) Philippe Lashermes et al.   PLANT JOURNAL

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis

(2013) Philippe Cubry et al.   BMC GENOMICS

A genetic map of an interspecific diploid pseudo testcross population of coffee

(2013) Germán Ariel López Gartner et al.   EUPHYTICA

Construction and characterization of a BAC library from the Coffea arabica genotype Timor Hybrid CIFC 832/2

(2013) S. M. B. Cação et al.   GENETICA

Regulation of galactomannan biosynthesis in coffee seeds

(2013) Thierry Joët et al.   JOURNAL OF EXPERIMENTAL BOTANY

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploidCoffea arabicagrown at contrasted temperatures

(2013) Marie-Christine Combes et al.   NEW PHYTOLOGIST

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

(2013) Alexis Dereeper et al.   PLANT MOLECULAR BIOLOGY

Genetic investigations on the caffeine and chlorogenic acid relationship in an interspecific cross between Coffea liberica dewevrei and C. pseudozanguebariae

(2013) Chin-Long Ky et al.   Tree Genetics & Genomes

An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

(2012) Jorge MC Mondego et al.   BMC PLANT BIOLOGY

Next-generation sequencing for understanding and accelerating crop domestication

(2012) R. J. Henry   Briefings in Functional Genomics

Climatic factors directly impact the volatile organic compound fingerprint in green Arabica coffee bean as well as coffee beverage quality

(2012) B. Bertrand et al.   FOOD CHEMISTRY

Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects

(2012) Philippe Cubry et al.   GENETIC RESOURCES AND CROP EVOLUTION

Application of large-scale sequencing to marker discovery in plants

(2012) Robert J Henry et al.   JOURNAL OF BIOSCIENCES

Recent Progress Using High-throughput Sequencing Technologies in Plant Molecular BreedingF

(2012) Qiang Gao et al.   Journal of Integrative Plant Biology

Comparative study of different molecular markers for classifying and establishing genetic relationships in Coffea canephora

(2012) Luís Felipe V. Ferrão et al.   PLANT SYSTEMATICS AND EVOLUTION

Characterization, high-resolution mapping and differential expression of three homologous PAL genes in Coffea canephora Pierre (Rubiaceae)

(2012) Maud Lepelley et al.   PLANTA

Geographical gradients in the genome size variation of wild coffee trees (Coffea) native to Africa and Indian Ocean islands

(2012) Norosoa J. Razafinarivo et al.   Tree Genetics & Genomes

Inheritance and relationship between key agronomic and quality traits in an interspecific cross between Coffea pseudozanguebariae Bridson and C. canephora Pierre

(2012) Doffou Sélastique Akaffou et al.   Tree Genetics & Genomes

Evidence of Intergenomic Relationships in Triploid Hybrids of Coffee (Coffea sp.) as Revealed by Meiotic Behavior and Genomic in Situ Hybridization

(2012) Juan-Carlos Herrera et al.   Tropical Plant Biology

The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits

(2011) Isabelle Privat et al.   BMC GENOMICS

Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; implications for the size, morphology, distribution and evolutionary history of Coffea

(2011) AARON P. DAVIS et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea)

(2011) Qingyi Yu et al.   PLANT JOURNAL

Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments

(2011) Alberto Cenci et al.   PLANT MOLECULAR BIOLOGY

Pectin Methylesterase Genes Influence Solid Wood Properties of Eucalyptus pilularis

(2011) T. R. Sexton et al.   PLANT PHYSIOLOGY

Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora

(2011) Thierry Leroy et al.   Tree Genetics & Genomes

Using association mapping to dissect the genetic basis of complex traits in plants

(2010) D. Hall et al.   Briefings in Functional Genomics

Development of microsatellite markers for identifying Brazilian Coffea arabica varieties

(2010) Elisa S.N. Vieira et al.   GENETICS AND MOLECULAR BIOLOGY

A High-Throughput Data Mining of Single Nucleotide Polymorphisms in Coffea Species Expressed Sequence Tags Suggests Differential Homeologous Gene Expression in the Allotetraploid Coffea arabica

(2010) R. O. Vidal et al.   PLANT PHYSIOLOGY

Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar

(2010) François Anthony et al.   PLANT SYSTEMATICS AND EVOLUTION

High resolution synteny maps allowing direct comparisons between the coffee and tomato genomes

(2010) Florent Lefebvre-Pautigny et al.   Tree Genetics & Genomes

Phylogeny of Tricalysia (Rubiaceae) and its Relationships with Allied Genera Based on Plastid DNA Data: Resurrection of the Genus Empogona1

(2009) James Tosh et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Chlorogenic acids and other relevant compounds in Brazilian coffees processed by semi-dry and wet post-harvesting methods

(2009) Giselle S. Duarte et al.   FOOD CHEMISTRY

Influence of environmental factors, wet processing and their interactions on the biochemical composition of green Arabica coffee beans

(2009) Thierry Joët et al.   FOOD CHEMISTRY

Genetic differentiation of wild and cultivated populations: diversity of Coffea canephora Pierre in Uganda

(2009) P. Musoli et al.   GENOME

Genotypic and Environmental Effects on Coffee (Coffea arabicaL.) Bean Fatty Acid Profile: Impact on Variety and Origin Chemometric Determination

(2009) Diana Villarreal et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study

(2009) Thierry Joët et al.   NEW PHYTOLOGIST

Analysis of genetic structure in a sample of coffee (Coffea arabica L.) using fluorescent SSR markers

(2009) German López-Gartner et al.   Tree Genetics & Genomes

Laurina mutation affected Coffea arabica tree size and shape mainly through internode dwarfism

(2009) Aurélie Lécolier et al.   TREES-STRUCTURE AND FUNCTION

Caffeine inheritance in interspecific hybrids of Coffea arabica x Coffea canephora (Gentianales, Rubiaceae)

(2008) Regina H.G. Priolli et al.   GENETICS AND MOLECULAR BIOLOGY

Comparison of the Effectiveness of Fatty Acids, Chlorogenic Acids, and Elements for the Chemometric Discrimination of Coffee (Coffea arabica L.) Varieties and Growing Origins

(2008) Benoît Bertrand et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Differential regulation of grain sucrose accumulation and metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) revealed through gene expression and enzyme activity analysis

(2008) Isabelle Privat et al.   NEW PHYTOLOGIST