Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley

Developmentally regulated expression and complex processing of barley pri-microRNAs

(2013) Katarzyna Kruszka et al.   BMC GENOMICS

Introns of plant pri-miRNAs enhance miRNA biogenesis

(2013) Dawid Bielewicz et al.   EMBO REPORTS

Enhanced microRNA accumulation through stemloop-adjacent introns

(2013) Rebecca Schwab et al.   EMBO REPORTS

Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species

(2013) Suvakanta Barik et al.   GENOMICS

Environmental Stresses Induce Misfolded Protein Aggregation in Plant Cells in a Microtubule-Dependent Manner

(2013) Yuko Nakajima et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Auxin: simply complicated

(2013) Michael Sauer et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of auxin in shaping shoot architecture

(2013) Andrea Gallavotti   JOURNAL OF EXPERIMENTAL BOTANY

Auxin-mediated plant architectural changes in response to shade and high temperature

(2013) Mieke de Wit et al.   PHYSIOLOGIA PLANTARUM

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Trip to ER

(2013) Xuan Ma et al.   RNA Biology

Plant tolerance to high temperature in a changing environment: scientific fundamentals and production of heat stress-tolerant crops

(2013) Craita E. Bita et al.   Frontiers in Plant Science

Genome-wide identification and expression analysis of heat-responsive and novel microRNAs in Populus tomentosa

(2012) Lei Chen et al.   GENE

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

Role of microRNAs and other sRNAs of plants in their changing environments

(2012) Katarzyna Kruszka et al.   JOURNAL OF PLANT PHYSIOLOGY

Down-regulation ofCBP80gene expression as a strategy to engineer a drought-tolerant potato

(2012) Marcin Pieczynski et al.   PLANT BIOTECHNOLOGY JOURNAL

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

Proper regeneration from in vitro cultured Arabidopsis thaliana requires the microRNA-directed action of an auxin response factor

(2012) Meng Qiao et al.   PLANT JOURNAL

Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice

(2012) Dheeraj Mittal et al.   PLoS One

TamiR159 Directed Wheat TaGAMYB Cleavage and Its Involvement in Anther Development and Heat Response

(2012) Yu Wang et al.   PLoS One

Balancing metabolites in drought: the sulfur assimilation conundrum

(2012) Kai Xun Chan et al.   TRENDS IN PLANT SCIENCE

High temperature combined with drought affect rainfed spring wheat and barley in South-Eastern Russia: I. Phenology and growth

(2012) Akbar Hossain et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Sensitivity of barley varieties to weather in Finland

(2011) K. HAKALA et al.   JOURNAL OF AGRICULTURAL SCIENCE

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa

(2011) Xiang Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Toward a Digital Gene Response: RNA G-Quadruplexes with Fewer Quartets Fold with Higher Cooperativity

(2011) Melissa A. Mullen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

mirEX: a platform for comparative exploration of plant pri-miRNA expression data

(2011) Dawid Bielewicz et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

NIMA-related kinases 6, 4, and 5 interact with each other to regulate microtubule organization during epidermal cell expansion in Arabidopsis thaliana

(2011) Hiroyasu Motose et al.   PLANT JOURNAL

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Profiling of cold-stress-responsive miRNAs in rice by microarrays

(2010) De-Kang Lv et al.   GENE

microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis

(2010) Linda Beauclair et al.   PLANT JOURNAL

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Auxin Control of Root Development

(2010) P. Overvoorde et al.   Cold Spring Harbor Perspectives in Biology

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Signals and prepatterns: new insights into organ polarity in plants

(2009) A. Y. Husbands et al.   GENES & DEVELOPMENT

Identification of novel stress-regulated microRNAs from Oryza sativa L.

(2009) Xinyu Jian et al.   GENOMICS

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

(2009) Bogna Szarzynska et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis AUXIN RESPONSE FACTOR6 and 8 Regulate Jasmonic Acid Biosynthesis and Floral Organ Development via Repression of Class 1 KNOX Genes

(2009) Ryo Tabata et al.   PLANT AND CELL PHYSIOLOGY

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing

(2009) B. D. Pant et al.   PLANT PHYSIOLOGY

Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis

(2009) Guru Jagadeeswaran et al.   PLANTA

Genome-wide survey of rice microRNAs and microRNA–target pairs in the root of a novel auxin-resistant mutant

(2009) Yijun Meng et al.   PLANTA

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

(2009) C. Addo-Quaye et al.   RNA

Plant miRNAs and abiotic stress responses

(2008) Xiao-Yan Lu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1

(2008) Z. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE