Fine-Scale Biogeography and the Inference of Ecological Interactions Among Neutrophilic Iron-Oxidizing Zetaproteobacteria as Determined by a Rule-Based Microbial Network

Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa

(2019) Elizabeth Trembath-Reichert et al.   ISME Journal

Geochemical and iron isotopic insights into hydrothermal iron oxyhydroxide deposit formation at Loihi Seamount

(2018) Olivier Rouxel et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Why do microbes exhibit weak biogeographic patterns?

(2018) Kyle M. Meyer et al.   ISME Journal

Biological rejuvenation of iron oxides in bioturbated marine sediments

(2018) Jacob P. Beam et al.   ISME Journal

Best practices for analysing microbiomes

(2018) Rob Knight et al.   NATURE REVIEWS MICROBIOLOGY

Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō‘ihi Seamount

(2017) Jarrod J. Scott et al.   ENVIRONMENTAL MICROBIOLOGY

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents

(2017) Sayaka Mino et al.   ISME Journal

Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lō’ihi Seamount, Hawai’i

(2017) Heather Fullerton et al.   ISME Journal

Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge

(2017) Jan Vander Roost et al.   PLoS One

Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc

(2017) Kevin W. Hager et al.   Frontiers in Microbiology

Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic–Anoxic Transition Zone

(2017) Beverly K. Chiu et al.   Frontiers in Microbiology

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units

(2017) Sarah L. Westcott et al.   mSphere

Comparative Analysis of Microbial Communities in Iron-Dominated Flocculent Mats in Deep-Sea Hydrothermal Environments

(2016) Hiroko Makita et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of microaerophilic Fe-oxidizing micro-organisms in producing banded iron formations

(2016) C. S. Chan et al.   Geobiology

Planktonic marine iron oxidizers drive iron mineralization under low-oxygen conditions

(2016) E. K. Field et al.   Geobiology

The Irony of Iron – Biogenic Iron Oxides as an Iron Source to the Ocean

(2016) David Emerson   Frontiers in Microbiology

Quantitative PCR Analysis of Functional Genes in Iron-Rich Microbial Mats at an Active Hydrothermal Vent System (Lō'ihi Seamount, Hawai'i)

(2015) Kelsey J. Jesser et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

(2015) Joanne B. Emerson et al.   ENVIRONMENTAL MICROBIOLOGY

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

(2015) Hon Lun Wong et al.   Scientific Reports

Biogeography and evolution of Thermococcus isolates from hydrothermal vent systems of the Pacific

(2015) Mark T. Price et al.   Frontiers in Microbiology

Mathematical Modeling of Microbial Community Dynamics: A Methodological Review

(2014) Hyun-Seob Song et al.   Processes

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hidden in plain sight: discovery of sheath-forming, iron-oxidizingZetaproteobacteriaat Loihi Seamount, Hawaii, USA

(2013) Emily J. Fleming et al.   FEMS MICROBIOLOGY ECOLOGY

Morphology of biogenic iron oxides records microbial physiology and environmental conditions: toward interpreting iron microfossils

(2013) S. T. Krepski et al.   Geobiology

The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA

(2013) Joyce M. McBeth et al.   Environmental Microbiology Reports

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific

(2013) Sayaka Mino et al.   Frontiers in Microbiology

Biogeochemistry and microbiology of microaerobic Fe(II) oxidation

(2012) David Emerson   BIOCHEMICAL SOCIETY TRANSACTIONS

A precision multi-sampler for deep-sea hydrothermal microbial mat studies

(2012) J.A. Breier et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin

(2012) G. E. FLORES et al.   Geobiology

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

(2011) Sean M. McAllister et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IRON IN MICROBIAL METABOLISMS

(2011) K. O. Konhauser et al.   Elements

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

Seamounts: Deep-Ocean Laboratories of Faunal Connectivity, Evolution, and Endemism

(2011) Timothy Shank   OCEANOGRAPHY

Microbiology of Seamounts: Common Patterns Observed in Community Structure

(2011) David Emerson et al.   OCEANOGRAPHY

Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields

(2011) Masahiro Yamamoto et al.   Frontiers in Microbiology

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts

(2010) Julie A. Huber et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial diversity in Fe-rich hydrothermal sediments at two South Tonga Arc submarine volcanoes

(2010) N. L. FORGET et al.   Geobiology

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

(2010) Clara S Chan et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

(2010) Masahito Hayatsu et al.   SOIL SCIENCE AND PLANT NUTRITION

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intertwined interspecies relationships: approaches to untangle the microbial network

(2009) Shin Haruta et al.   ENVIRONMENTAL MICROBIOLOGY

Abundance ofZetaproteobacteriawithin crustal fluids in back-arc hydrothermal fields of the Southern Mariana Trough

(2009) Shingo Kato et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough

(2009) Shingo Kato et al.   ENVIRONMENTAL MICROBIOLOGY

Redox Speciation and Distribution within Diverse Iron-dominated Microbial Habitats at Loihi Seamount

(2009) Brian T. Glazer et al.   GEOMICROBIOLOGY JOURNAL