Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

(2014) Alexander J. Probst et al.   Nature Communications

Changes in the deep subsurface microbial biosphere resulting from a field-scale CO2 geosequestration experiment

(2014) Andre Mu et al.   Frontiers in Microbiology

Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat

(2014) Anna Hanke et al.   Frontiers in Microbiology

Drilling and sampling a natural CO2 reservoir: Implications for fluid flow and CO2-fluid–rock reactions during CO2 migration through the overburden

(2013) N. Kampman et al.   CHEMICAL GEOLOGY

Characteristics of CO2-driven cold-water geyser, Crystal Geyser in Utah: experimental observation and mechanism analyses

(2013) W. S. Han et al.   GEOFLUIDS

Lessons in carbon storage from geological analogues

(2013) Mike Bickle et al.   GEOLOGY

Man-made versus natural CO2 leakage: A 400 k.y. history of an analogue for engineered geological storage of CO2

(2013) Neil M. Burnside et al.   GEOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

(2013) J. H. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nature and Extent of the Deep Biosphere

(2013) F. S. Colwell et al.   Reviews in Mineralogy & Geochemistry

The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA

(2013) Joyce M. McBeth et al.   Environmental Microbiology Reports

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

(2013) R. S. Kantor et al.   mBio

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

(2011) Sean M. McAllister et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-resolution 2D and 3D cryo-TEM reveals structural adaptations of two stalk-forming bacteria to an Fe-oxidizing lifestyle

(2011) Luis R. Comolli et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular characterization of putative biocorroding microbiota with a novel niche detection of Epsilon- and Zetaproteobacteria in Pacific Ocean coastal seawaters

(2011) Hongyue Dang et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation and characterization of a novel biomineral stalk-forming iron-oxidizing bacterium from a circumneutral groundwater seep

(2011) Sean T. Krepski et al.   ENVIRONMENTAL MICROBIOLOGY

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Microbially Enhanced Carbon Capture and Storage by Mineral-Trapping and Solubility-Trapping

(2010) Andrew C. Mitchell et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Monitoring of the microbial community composition in saline aquifers during CO2 storage by fluorescence in situ hybridisation

(2010) Daria Morozova et al.   International Journal of Greenhouse Gas Control

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

(2010) Clara S Chan et al.   ISME Journal

Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean

(2010) Nianzhi Jiao et al.   NATURE REVIEWS MICROBIOLOGY

Composition and Activity of an Autotrophic Fe(II)-Oxidizing, Nitrate-Reducing Enrichment Culture

(2009) M. Blothe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle

(2008) Murray Ronald Badger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Antibiotic Resistance in Bacteria Isolated from the Deep Terrestrial Subsurface

(2008) Mindy G. Brown et al.   MICROBIAL ECOLOGY

Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms

(2008) F. R. Tabita et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY