Detecting distant-homology protein structures by aligning deep neural-network based contact maps
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Detecting distant-homology protein structures by aligning deep neural-network based contact maps
Authors
Keywords
-
Journal
PLoS Computational Biology
Volume 15, Issue 10, Pages e1007411
Publisher
Public Library of Science (PLoS)
Online
2019-10-18
DOI
10.1371/journal.pcbi.1007411
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins – extended Database
- (2017) John-Marc Chandonia et al. JOURNAL OF MOLECULAR BIOLOGY
- Evaluation of the template-based modeling in CASP12
- (2017) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein structure determination using metagenome sequence data
- (2017) Sergey Ovchinnikov et al. SCIENCE
- Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
- (2017) Sheng Wang et al. PLoS Computational Biology
- The I-TASSER Suite: protein structure and function prediction
- (2015) Jianyi Yang et al. NATURE METHODS
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
- (2014) David T. Jones et al. BIOINFORMATICS
- Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns
- (2014) Marcin J. Skwark et al. PLoS Computational Biology
- Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
- (2013) H. Kamisetty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
- (2011) David T. Jones et al. BIOINFORMATICS
- A Spectral Approach to Protein Structure Alignment
- (2011) Y Shibberu et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling
- (2011) Jian Zhang et al. STRUCTURE
- Fast overlapping of protein contact maps by alignment of eigenvectors
- (2010) Pietro Di Lena et al. BIOINFORMATICS
- High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH
- (2010) Florian Teichert et al. BMC BIOINFORMATICS
- Protein structure prediction: when is it useful?
- (2009) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- Profile Comparer: a program for scoring and aligning profile hidden Markov models
- (2008) M. Madera BIOINFORMATICS
- A comprehensive assessment of sequence-based and template-based methods for protein contact prediction
- (2008) Sitao Wu et al. BIOINFORMATICS
- MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
- (2008) Sitao Wu et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started