Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression

A biotechnological process efficiently co-produces two high value-added products, glucose and xylooligosaccharides, from sugarcane bagasse

(2016) Jian-Long Xue et al.   BIORESOURCE TECHNOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Production and characterization of cellulolytic enzyme from Penicillium oxalicum GZ-2 and its application in lignocellulose saccharification

(2015) Hanpeng Liao et al.   BIOMASS & BIOENERGY

Efficient enzymatic hydrolysis and simultaneous saccharification and fermentation of sugarcane bagasse pulp for ethanol production by cellulase from Penicillium oxalicum EU2106 and thermotolerant Saccharomyces cerevisiae ZM1-5

(2015) Yeping Huang et al.   BIOMASS & BIOENERGY

Redesigning the regulatory pathway to enhance cellulase production in Penicillium oxalicum

(2015) Guangshan Yao et al.   Biotechnology for Biofuels

Isolation and characterization of a novel Penicillium oxalicum strain Z1-3 with enhanced cellobiohydrolase production using cellulase-hydrolyzed sugarcane bagasse as carbon source

(2015) Lei Jing et al.   INDUSTRIAL CROPS AND PRODUCTS

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

A new transcription factor for mitosis: inSchizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression

(2015) Angad Garg et al.   NUCLEIC ACIDS RESEARCH

Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum

(2015) Zhonghai Li et al.   PLoS Genetics

Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi

(2014) Shuji Tani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Predominance of Trichoderma and Penicillium in cellulolytic aerobic filamentous fungi from subtropical and tropical forests in China, and their use in finding highly efficient β-glucosidase

(2014) Zheng Zhang et al.   Biotechnology for Biofuels

Recent advances in understanding the role of cellulose accessibility in enzymatic hydrolysis of lignocellulosic substrates

(2014) Xianzhi Meng et al.   CURRENT OPINION IN BIOTECHNOLOGY

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

VIB1, a Link between Glucose Signaling and Carbon Catabolite Repression, Is Essential for Plant Cell Wall Degradation by Neurospora crassa

(2014) Yi Xiong et al.   PLoS Genetics

Cellodextrin transporters play important roles in cellulase induction in the cellulolytic fungus Penicillium oxalicum

(2013) Jie Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Promotion of extracellular lignocellulolytic enzymes production by restraining the intracellular β-glucosidase in Penicillium decumbens

(2013) Mei Chen et al.   BIORESOURCE TECHNOLOGY

Comparative secretome analysis of Trichoderma asperellum S4F8 and Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse

(2013) Isa Marx et al.   Biotechnology for Biofuels

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose

(2013) Robert Bischof et al.   Biotechnology for Biofuels

Regulation of Cellulase and Hemicellulase Gene Expression in Fungi

(2013) Antonella Amore et al.   CURRENT GENOMICS

Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbens

(2013) Guodong Liu et al.   PLoS One

Long-term strain improvements accumulate mutations in regulatory elements responsible for hyper-production of cellulolytic enzymes

(2013) Guodong Liu et al.   Scientific Reports

Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes inNeurospora crassa

(2013) Samuel T. Coradetti et al.   MicrobiologyOpen

Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production

(2012) Reeta Rani Singhania et al.   BIORESOURCE TECHNOLOGY

NosA, a transcription factor important in Aspergillus fumigatus stress and developmental response, rescues the germination defect of a laeA deletion

(2012) Alexandra A. Soukup et al.   FUNGAL GENETICS AND BIOLOGY

A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei

(2012) Mikiko Nitta et al.   FUNGAL GENETICS AND BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

(2012) S. T. Coradetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Alternatives to Trichoderma reesei in biofuel production

(2011) Alexander V. Gusakov   TRENDS IN BIOTECHNOLOGY

Development of a highly efficient gene targeting system allowing rapid genetic manipulations in Penicillium decumbens

(2010) Zhong-Hai Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties

(2010) Marika Vitikainen et al.   BMC GENOMICS

Regulation of yeast forkhead transcription factors and FoxM1 by cyclin-dependent and polo-like kinases

(2010) Hiroshi Murakami et al.   CELL CYCLE

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols