Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum

Characterization of a copper responsive promoter and its mediated overexpression of the xylanase regulator 1 results in an induction-independent production of cellulases in Trichoderma reesei

(2015) Xinxing Lv et al.   Biotechnology for Biofuels

Redesigning the regulatory pathway to enhance cellulase production in Penicillium oxalicum

(2015) Guangshan Yao et al.   Biotechnology for Biofuels

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

(2014) Mari Häkkinen et al.   Biotechnology for Biofuels

Deciphering the Cis-Regulatory Elements for XYR1 and CRE1 Regulators in Trichoderma reesei

(2014) Rafael Silva-Rocha et al.   PLoS One

VIB1, a Link between Glucose Signaling and Carbon Catabolite Repression, Is Essential for Plant Cell Wall Degradation by Neurospora crassa

(2014) Yi Xiong et al.   PLoS Genetics

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Promotion of extracellular lignocellulolytic enzymes production by restraining the intracellular β-glucosidase in Penicillium decumbens

(2013) Mei Chen et al.   BIORESOURCE TECHNOLOGY

Regulation of Cellulase and Hemicellulase Gene Expression in Fungi

(2013) Antonella Amore et al.   CURRENT GENOMICS

Enhancing cellulase production in Trichoderma reesei RUT C30 through combined manipulation of activating and repressing genes

(2013) Shaowen Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbens

(2013) Guodong Liu et al.   PLoS One

Improved cellulase production via disruption of PDE01641 in cellulolytic fungus Penicillium decumbens

(2012) Yanmei Zhang et al.   BIORESOURCE TECHNOLOGY

Deciphering Transcriptional Regulatory Mechanisms Associated with Hemicellulose Degradation in Neurospora crassa

(2012) Jianping Sun et al.   EUKARYOTIC CELL

A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei

(2012) Mikiko Nitta et al.   FUNGAL GENETICS AND BIOLOGY

ManR, a novel Zn(II)2Cys6 transcriptional activator, controls the β-mannan utilization system in Aspergillus oryzae

(2012) Masahiro Ogawa et al.   FUNGAL GENETICS AND BIOLOGY

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

(2012) E. A. Znameroski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal enzyme sets for plant polysaccharide degradation

(2011) Joost van den Brink et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcription analysis of lignocellulolytic enzymes of Penicillium decumbens 114-2 and its catabolite-repression-resistant mutant

(2011) Xiaomin Wei et al.   COMPTES RENDUS BIOLOGIES

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Trichoderma reesei RUT-C30 - thirty years of strain improvement

(2011) R. Peterson et al.   MICROBIOLOGY-SGM

Trichoderma: the genomics of opportunistic success

(2011) Irina S. Druzhinina et al.   NATURE REVIEWS MICROBIOLOGY

Identification of the CRE-1 Cellulolytic Regulon in Neurospora crassa

(2011) Jianping Sun et al.   PLoS One

Development of a highly efficient gene targeting system allowing rapid genetic manipulations in Penicillium decumbens

(2010) Zhong-Hai Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Loss of Aspergillus oryzae amyR function indirectly affects hemicellulolytic and cellulolytic enzyme production

(2010) Jun Watanabe et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina

(2009) Christian P Kubicek et al.   Biotechnology for Biofuels

Transcriptional profiling of cellulase and expansin-related genes in a hypercellulolytic Trichoderma reesei

(2009) Jonathan Verbeke et al.   BIOTECHNOLOGY LETTERS

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

(2009) Chaoguang Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Regulation of xyr1, Encoding the Main Regulator of the Xylanolytic and Cellulolytic Enzyme System in Hypocrea jecorina

(2008) A. R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

(2008) J. Park et al.   BIOINFORMATICS

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains

(2008) Isabelle Herpoël-Gimbert et al.   Biotechnology for Biofuels

Binding of two transcriptional factors, Xyr1 and ACEI, in the promoter region of cellulase cbh1 gene

(2008) Min Ling et al.   BIOTECHNOLOGY LETTERS

CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans

(2008) Elsy N. Tamayo et al.   FUNGAL GENETICS AND BIOLOGY

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS