- Home
- Publications
- Publication Search
- Publication Details
Title
Improved maize reference genome with single-molecule technologies
Authors
Keywords
-
Journal
NATURE
Volume -, Issue -, Pages -
Publisher
Springer Nature
Online
2017-06-13
DOI
10.1038/nature22971
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A hybrid approach for de novo human genome sequence assembly and phasing
- (2016) Yulia Mostovoy et al. NATURE METHODS
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize
- (2016) Candice N. Hirsch et al. PLANT CELL
- Inbreeding drives maize centromere evolution
- (2016) Kevin L. Schneider et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Open chromatin reveals the functional maize genome
- (2016) Eli Rodgers-Melnick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
- (2016) Bo Wang et al. Nature Communications
- Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres
- (2015) Jonathan I. Gent et al. GENETICS
- Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
- (2015) Robert VanBuren et al. NATURE
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- Assembly and diploid architecture of an individual human genome via single-molecule technologies
- (2015) Matthew Pendleton et al. NATURE METHODS
- GenBank
- (2015) Karen Clark et al. NUCLEIC ACIDS RESEARCH
- Genetic, evolutionary and plant breeding insights from the domestication of maize
- (2015) Sarah Hake et al. eLife
- Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres
- (2015) Jonathan I. Gent et al. GENETICS
- Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology
- (2015) Hongzhi Cao et al. GigaScience
- Structural variations in plant genomes
- (2014) R. K. Saxena et al. Briefings in Functional Genomics
- Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes
- (2014) MeiYee Law et al. PLANT PHYSIOLOGY
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
- (2014) W. Xiong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize
- (2014) Jason G. Wallace et al. PLoS Genetics
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- Comparative population genomics of maize domestication and improvement
- (2012) Matthew B Hufford et al. NATURE GENETICS
- Maize HapMap2 identifies extant variation from a genome in flux
- (2012) Jer-Ming Chia et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Accessing complex crop genomes with next-generation sequencing
- (2012) David Edwards et al. THEORETICAL AND APPLIED GENETICS
- Serpin protease inhibitors in plant biology
- (2011) Robert Fluhr et al. PHYSIOLOGIA PLANTARUM
- Targeted Identification of Short Interspersed Nuclear Element Families Shows Their Widespread Existence and Extreme Heterogeneity in Plant Genomes
- (2011) Torsten Wenke et al. PLANT CELL
- Maize Rough Endosperm3 Encodes an RNA Splicing Factor Required for Endosperm Cell Differentiation and Has a Nonautonomous Effect on Embryo Development
- (2011) R. Fouquet et al. PLANT CELL
- A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome
- (2011) Martin W. Ganal et al. PLoS One
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
- (2010) R. A. Swanson-Wagner et al. GENOME RESEARCH
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes
- (2009) M. Rho et al. NUCLEIC ACIDS RESEARCH
- Fine-grained annotation and classification of de novo predicted LTR retrotransposons
- (2009) Sascha Steinbiss et al. NUCLEIC ACIDS RESEARCH
- Genetic Properties of the Maize Nested Association Mapping Population
- (2009) M. D. McMullen et al. SCIENCE
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- The Physical and Genetic Framework of the Maize B73 Genome
- (2009) Fusheng Wei et al. PLoS Genetics
- Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs
- (2009) Carol Soderlund et al. PLoS Genetics
- Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
- (2009) Regina S. Baucom et al. PLoS Genetics
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- Maize Genome Structure Variation: Interplay between Retrotransposon Polymorphisms and Genic Recombination
- (2008) H. K. Dooner et al. PLANT CELL
- Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations
- (2008) A. Sharma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started