Characterization and repurposing of the endogenous Type I-F CRISPR–Cas system of Zymomonas mobilis for genome engineering

Engineered Zymomonas mobilis tolerant to acetic acid and low pH via multiplex atmospheric and room temperature plasma mutagenesis

(2019) Bo Wu et al.   Biotechnology for Biofuels

CRISPR-assisted multi-dimensional regulation for fine-tuning gene expression in Bacillus subtilis

(2019) Zhenghui Lu et al.   NUCLEIC ACIDS RESEARCH

Prediction and characterization of promoters and ribosomal binding sites of Zymomonas mobilis in system biology era

(2019) Yongfu Yang et al.   Biotechnology for Biofuels

The next generation of CRISPR–Cas technologies and applications

(2019) Adrian Pickar-Oliver et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus

(2019) Claudio Hidalgo-Cantabrana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

(2018) Shihui Yang et al.   Biotechnology for Biofuels

A CRISPR–dCas Toolbox for Genetic Engineering and Synthetic Biology

(2018) Xiaoshu Xu et al.   JOURNAL OF MOLECULAR BIOLOGY

Advances and prospects in metabolic engineering of Zymomonas mobilis

(2018) Xia Wang et al.   METABOLIC ENGINEERING

Exploiting endogenous CRISPR-Cas system for multiplex genome editing in Clostridium tyrobutyricum and engineer the strain for high-level butanol production

(2018) Jie Zhang et al.   METABOLIC ENGINEERING

Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri

(2018) Emily A. Stout et al.   MICROBIOLOGY-SGM

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

T5 exonuclease-dependent assembly offers a low-cost method for efficient cloning and site-directed mutagenesis

(2018) Yongzhen Xia et al.   NUCLEIC ACIDS RESEARCH

Harnessing the native type I-B CRISPR-Cas for genome editing in a polyploid archaeon

(2017) Feiyue Cheng et al.   Journal of Genetics and Genomics

Using the CRISPR/Cas9 system to eliminate native plasmids of Zymomonas mobilis ZM4

(2016) Qing-Hua Cao et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

(2016) Shihui Yang et al.   Biotechnology for Biofuels

Gene Repression in Haloarchaea Using the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas I-B System

(2016) Aris-Edda Stachler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems

(2016) Ryan T. Leenay et al.   MOLECULAR CELL

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

(2016) Andrew D Garst et al.   NATURE BIOTECHNOLOGY

Improved Genome Editing Efficiency and Flexibility Using Modified Oligonucleotides with TALEN and CRISPR-Cas9 Nucleases

(2016) Jean-Baptiste Renaud et al.   Cell Reports

Zymomonas mobilis as a model system for production of biofuels and biochemicals

(2016) Shihui Yang et al.   Microbial Biotechnology

Harnessing heterologous and endogenous CRISPR-Cas machineries for efficient markerless genome editing in Clostridium

(2016) Michael E. Pyne et al.   Scientific Reports

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

(2015) Ali Mohagheghi et al.   Biotechnology for Biofuels

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa

(2015) MaryClare F. Rollins et al.   NUCLEIC ACIDS RESEARCH

Harnessing Type I and Type III CRISPR-Cas systems for genome editing

(2015) Yingjun Li et al.   NUCLEIC ACIDS RESEARCH

Structural Principles of CRISPR RNA Processing

(2015) Hong Li   STRUCTURE

Zymomonas mobilis: a novel platform for future biorefineries

(2014) Ming He et al.   Biotechnology for Biofuels

Improving xylose utilization by recombinant Zymomonas mobilis strain 8b through adaptation using 2-deoxyglucose

(2014) Ali Mohagheghi et al.   Biotechnology for Biofuels

An Active Immune Defense with a Minimal CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) RNA and without the Cas6 Protein

(2014) Lisa-Katharina Maier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Unravelling the structural and mechanistic basis of CRISPR–Cas systems

(2014) John van der Oost et al.   NATURE REVIEWS MICROBIOLOGY

Efficient programmable gene silencing by Cascade

(2014) Devashish Rath et al.   NUCLEIC ACIDS RESEARCH

Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression

(2014) Michelle L. Luo et al.   NUCLEIC ACIDS RESEARCH

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer

(2014) Corinna Richter et al.   NUCLEIC ACIDS RESEARCH

Kinetic modelling of the Zymomonas mobilis Entner-Doudoroff pathway: insights into control and functionality

(2013) R. Rutkis et al.   MICROBIOLOGY-SGM

Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing inSulfolobus islandicus

(2013) Wenfang Peng et al.   RNA Biology

CRISPRTarget

(2013) Ambarish Biswas et al.   RNA Biology

Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands

(2013) Reuben B. Vercoe et al.   PLoS Genetics

An Archaeal Immune System Can Detect Multiple Protospacer Adjacent Motifs (PAMs) to Target Invader DNA

(2012) Susan Fischer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanism of substrate selection by a highly specific CRISPR endoribonuclease

(2012) S. H. Sternberg et al.   RNA

DNA restriction-modification systems in the ethanologen, Zymomonas mobilis ZM4

(2010) Aidan L. Kerr et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

(2010) Soley Gudbergsdottir et al.   MOLECULAR MICROBIOLOGY

Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

(2010) Dmitriy M. Chudakov et al.   PHYSIOLOGICAL REVIEWS

An end-joining repair mechanism in Escherichia coli

(2010) R. Chayot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease

(2010) Rachel E. Haurwitz et al.   SCIENCE

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

(2009)   MICROBIOLOGY-SGM

Improved genome annotation for Zymomonas mobilis

(2009) Shihui Yang et al.   NATURE BIOTECHNOLOGY

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE