Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes

Comparative Cost and Effort of Fish Distribution Detection via Environmental DNA Analysis and Electrofishing

(2017) Nathan T. Evans et al.   FISHERIES

Disentangling spatial and environmental determinants of fish species richness and assemblage structure in Neotropical rainforest streams

(2017) Kévin Cilleros et al.   FRESHWATER BIOLOGY

eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests

(2017) Carla M. Lopes et al.   Molecular Ecology Resources

Controls on eDNA movement in streams: Transport, Retention, and Resuspension

(2017) Arial J. Shogren et al.   Scientific Reports

Active and passive environmental DNA surveillance of aquatic invasive species

(2016) Megan Simmons et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Taxonomic and functional diversity patterns reveal different processes shaping European and Amazonian stream fish assemblages

(2016) Kévin Cilleros et al.   JOURNAL OF BIOGEOGRAPHY

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Fine-tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems

(2016) Heather L. A. Robson et al.   Molecular Ecology Resources

The importance of including imperfect detection models in eDNA experimental design

(2016) Janna R. Willoughby et al.   Molecular Ecology Resources

Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species

(2016) Molly C. Schmelzle et al.   Molecular Ecology Resources

Balancing hydropower and biodiversity in the Amazon, Congo, and Mekong

(2016) K. O. Winemiller et al.   SCIENCE

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae

(2016) Vanessa Rossetto Marcelino et al.   Scientific Reports

Estimating species richness using environmental DNA

(2016) Brett P. Olds et al.   Ecology and Evolution

Environmental DNA detects Critically Endangered largetooth sawfish in the wild

(2016) CA Simpfendorfer et al.   Endangered Species Research

Trails of river monsters: Detecting critically endangered Mekong giant catfish Pangasianodon gigas using environmental DNA

(2016) Bellemain Eva et al.   Global Ecology and Conservation

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System

(2016) Raphaël Civade et al.   PLoS One

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

(2016) Philip Francis Thomsen et al.   PLoS One

Effect of reduced impact logging and small-scale mining disturbances on Neotropical stream fish assemblages

(2015) Luc Allard et al.   AQUATIC SCIENCES

Early detection of eukaryotic communities from marine biofilm using high-throughput sequencing: an assessment of different sampling devices

(2015) Xavier Pochon et al.   BIOFOULING

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Applications and limitations of measuring environmental DNA as indicators of the presence of aquatic animals

(2015) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

The downside of eDNA as a survey tool in water bodies

(2015) Jean-Marc Roussel et al.   JOURNAL OF APPLIED ECOLOGY

A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan

(2015) Sou Fukumoto et al.   JOURNAL OF APPLIED ECOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

An Assessment of the Effect of Rotenone on Selected Non-Target Aquatic Fauna

(2015) Tatenda Dalu et al.   PLoS One

Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages

(2015) Carola Gómez-Rodríguez et al.   Methods in Ecology and Evolution

Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

(2015) Emily A. Brown et al.   Ecology and Evolution

Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods

(2015) Jullien M. Flynn et al.   Ecology and Evolution

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

An improved nonparametric lower bound of species richness via a modified good-turing frequency formula

(2014) Chun-Huo Chiu et al.   BIOMETRICS

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Quantifying fish species richness and abundance in Amazonian streams: assessment of a multiple gear method suitable forTerra firmestream fish assemblages

(2014) J. I. Mojica et al.   FISHERIES MANAGEMENT AND ECOLOGY

Electrofishing efficiency in low conductivity neotropical streams: towards a non-destructive fish sampling method

(2014) L. Allard et al.   FISHERIES MANAGEMENT AND ECOLOGY

Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfishProcambarus clarkiiin freshwater ponds

(2014) Anne Tréguier et al.   JOURNAL OF APPLIED ECOLOGY

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

(2014) Amrita Srivathsan et al.   Molecular Ecology Resources

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Determinants of fish assemblage structure in Mount Itoupé mountain streams (French Guiana)

(2013) Sébastien Brosse et al.   ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Factors influencing detection of eDNA from a stream-dwelling amphibian

(2013) David S. Pilliod et al.   Molecular Ecology Resources

Applications of DNA barcoding to fish landings: authentication and diversity assessmente

(2013) Alba Ardura et al.   ZooKeys

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The relationship between species replacement, dissimilarity derived from nestedness, and nestedness

(2012) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Local and regional rarity in a diverse tropical fish assemblage

(2012) A. P. Hercos et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Underwater video analysis as a non-destructive alternative to electrofishing for sampling imperilled headwater stream fishes

(2011) B. R. Ellender et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Longitudinal patterns of fish assemblages in a large tropical river in southeastern Brazil: evaluating environmental influences and some concepts in river ecology

(2008) Francisco Gerson Araújo et al.   HYDROBIOLOGIA

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION