Flow of DNA in micro/nanofluidics: From fundamentals to applications

The polymer physics of single DNA confined in nanochannels

(2016) Liang Dai et al.   ADVANCES IN COLLOID AND INTERFACE SCIENCE

Imaging potassium-flux through individual electropores in droplet interface bilayers

(2016) Marc Szabo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Enhancing nanopore sensing with DNA nanotechnology

(2016) Ulrich F. Keyser   Nature Nanotechnology

Advances in the microrheology of complex fluids

(2016) Thomas Andrew Waigh   REPORTS ON PROGRESS IN PHYSICS

DNA translocation through single-layer boron nitride nanopores

(2016) Zonglin Gu et al.   Soft Matter

Nanoscale Study of Polymer Dynamics

(2015) Masoumeh Keshavarz et al.   ACS Nano

Inhibitor of endocytosis impairs gene electrotransfer to mouse muscle in vivo

(2015) Bostjan Markelc et al.   BIOELECTROCHEMISTRY

Flow of DNA solutions in a microfluidic gradual contraction

(2015) Shelly Gulati et al.   Biomicrofluidics

Fabrication of solid-state nanopores and its perspectives

(2015) Jiri Kudr et al.   ELECTROPHORESIS

Clinical potential of electroporation for gene therapy and DNA vaccine delivery

(2015) Laure Lambricht et al.   Expert Opinion on Drug Delivery

Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays

(2015) A. C. Y. Mak et al.   GENETICS

Diffusive dynamics of DNA unzipping in a nanopore

(2015) Anna Stachiewicz et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Biphasic Resistive Pulses and Ion Concentration Modulation during Particle Translocation through Cylindrical Nanopores

(2015) Kaikai Chen et al.   Journal of Physical Chemistry C

When Ends Meet: Circular DNA Stretches Differently in Elongational Flows

(2015) Yanfei Li et al.   MACROMOLECULES

Template-Directed Synthesis of Structurally Defined Branched Polymers

(2015) Amanda B. Marciel et al.   MACROMOLECULES

Gel mesh as “brake” to slow down DNA translocation through solid-state nanopores

(2015) Zhipeng Tang et al.   Nanoscale

Challenges in DNA motion control and sequence readout using nanopore devices

(2015) Spencer Carson et al.   NANOTECHNOLOGY

Data analysis methods for solid-state nanopores

(2015) Calin Plesa et al.   NANOTECHNOLOGY

High-throughput optical sensing of nucleic acids in a nanopore array

(2015) Shuo Huang et al.   Nature Nanotechnology

Identification of single nucleotides in MoS2 nanopores

(2015) Jiandong Feng et al.   Nature Nanotechnology

CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis

(2015) Jennifer McCaffrey et al.   NUCLEIC ACIDS RESEARCH

Flow Enhancement due to Elastic Turbulence in Channel Flows of Shear Thinning Fluids

(2015) Hugues Bodiguel et al.   PHYSICAL REVIEW LETTERS

Single-molecule sensing with nanopores

(2015) Murugappan Muthukumar et al.   PHYSICS TODAY

Automation of a single-DNA molecule stretching device

(2015) Kristian Tølbøl Sørensen et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Nonlinear rheology of entangled polymers at turning point

(2015) Shi-Qing Wang   Soft Matter

Shear banding in entangled polymers in the micron scale gap: a confocal-rheoscopic study

(2015) Pouyan E. Boukany et al.   Soft Matter

Visualization of polymer relaxation in viscoelastic turbulent micro-channel flow

(2015) Jiayan Tai et al.   Scientific Reports

Topology-Controlled Relaxation Dynamics of Single Branched Polymers

(2015) Danielle J. Mai et al.   ACS Macro Letters

Nanopore-based Fourth-generation DNA Sequencing Technology

(2015) Yanxiao Feng et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Slowing DNA Transport Using Graphene-DNA Interactions

(2014) Shouvik Banerjee et al.   ADVANCED FUNCTIONAL MATERIALS

Fundamental Studies of Nanofluidics: Nanopores, Nanochannels, and Nanopipets

(2014) Daniel G. Haywood et al.   ANALYTICAL CHEMISTRY

Electroporation-Based Technologies for Medicine: Principles, Applications, and Challenges

(2014) Martin L. Yarmush et al.   Annual Review of Biomedical Engineering

DNA translocation through short nanofluidic channels under asymmetric pulsed electric field

(2014) C. Gupta et al.   Biomicrofluidics

Smooth DNA Transport through a Narrowed Pore Geometry

(2014) Spencer Carson et al.   BIOPHYSICAL JOURNAL

Retarding and manipulating of DNA molecules translocation through nanopores

(2014) Yin Zhang et al.   CHINESE SCIENCE BULLETIN

Nanopore Sequencing: From Imagination to Reality

(2014) H. Bayley   CLINICAL CHEMISTRY

Physics and technological aspects of nanofluidics

(2014) Lyderic Bocquet et al.   LAB ON A CHIP

Extended de Gennes Regime of DNA Confined in a Nanochannel

(2014) Liang Dai et al.   MACROMOLECULES

Velocity of DNA during Translocation through a Solid-State Nanopore

(2014) Calin Plesa et al.   NANO LETTERS

DNA origami nanopores: developments, challenges and perspectives

(2014) Silvia Hernández-Ainsa et al.   Nanoscale

Decoding long nanopore sequencing reads of natural DNA

(2014) Andrew H Laszlo et al.   NATURE BIOTECHNOLOGY

Confined polymers in the extended de Gennes regime

(2014) E. Werner et al.   PHYSICAL REVIEW E

Generating Aligned Micellar Nanowire Arrays by Dewetting of Micropatterned Surfaces

(2014) Piotr J. Glazer et al.   Small

Determining elasticity from single polymer dynamics

(2014) Folarin Latinwo et al.   Soft Matter

Effect of YOYO-1 on the mechanical properties of DNA

(2014) Binu Kundukad et al.   Soft Matter

Origin of Stress Overshoot during Startup Shear of Entangled Polymer Melts

(2014) Yuyuan Lu et al.   ACS Macro Letters

Nanoslit Confined DNA at Low Ionic Strengths

(2014) Jinyong Lee et al.   ACS Macro Letters

Nanopore Stochastic Detection: Diversity, Sensitivity, and Beyond

(2013) Guihua Wang et al.   ACCOUNTS OF CHEMICAL RESEARCH

Differentiation of Short, Single-Stranded DNA Homopolymers in Solid-State Nanopores

(2013) Kimberly Venta et al.   ACS Nano

Nanostraw–Electroporation System for Highly Efficient Intracellular Delivery and Transfection

(2013) Xi Xie et al.   ACS Nano

DNA Origami Nanopores for Controlling DNA Translocation

(2013) Silvia Hernández-Ainsa et al.   ACS Nano

High-Resolution Hydrodynamic Chromatographic Separation of Large DNA Using Narrow, Bare Open Capillaries: A Rapid and Economical Alternative Technology to Pulsed-Field Gel Electrophoresis?

(2013) Lei Liu et al.   ANALYTICAL CHEMISTRY

Size separation of biomolecules and bioparticles using micro/nanofabricated structures

(2013) Jie Xuan et al.   Analytical Methods

Nanobiodevices for Biomolecule Analysis and Imaging

(2013) Takao Yasui et al.   Annual Review of Analytical Chemistry

Simulation of single DNA molecule stretching and immobilization in a de-wetting two-phase flow over micropillar-patterned surface

(2013) Wei-Ching Liao et al.   Biomicrofluidics

Micro-/nanofluidics based cell electroporation

(2013) Shengnian Wang et al.   Biomicrofluidics

Through the eye of the needle: recent advances in understanding biopolymer translocation

(2013) Debabrata Panja et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Is DNA a Good Model Polymer?

(2013) Douglas R. Tree et al.   MACROMOLECULES

Comparisons of a Polymer in Confinement versus Applied Force

(2013) Liang Dai et al.   MACROMOLECULES

Pressure-Controlled Motion of Single Polymers through Solid-State Nanopores

(2013) Bo Lu et al.   NANO LETTERS

An electro-hydrodynamics-based model for the ionic conductivity of solid-state nanopores during DNA translocation

(2013) Binquan Luan et al.   NANOTECHNOLOGY

Nonlinear Elastic Instability in Channel Flows at Low Reynolds Numbers

(2013) L. Pan et al.   PHYSICAL REVIEW LETTERS

Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device

(2013) R. Marie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microfluidic extensional rheometry using a hyperbolic contraction geometry

(2013) Thomas J. Ober et al.   RHEOLOGICA ACTA

Slowing Down DNA Translocation Through Solid-State Nanopores by Pressure

(2013) Hengbin Zhang et al.   Small

Beyond Gel Electrophoresis: Microfluidic Separations, Fluorescence Burst Analysis, and DNA Stretching

(2012) Kevin D. Dorfman et al.   CHEMICAL REVIEWS

Disease Detection and Management via Single Nanopore-Based Sensors

(2012) Joseph E. Reiner et al.   CHEMICAL REVIEWS

Nanofluidic devices towards single DNA molecule sequence mapping

(2012) Rodolphe Marie et al.   Journal of Biophotonics

Pressure-Induced Transport of DNA Confined in Narrow Capillary Channels

(2012) Xiayan Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Unzipping Kinetics of Duplex DNA Containing Oxidized Lesions in an α-Hemolysin Nanopore

(2012) Qian Jin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Measurement of the Docking Time of a DNA Molecule onto a Solid-State Nanopore

(2012) Stefan W. Kowalczyk et al.   NANO LETTERS

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

(2012) Elizabeth A Manrao et al.   NATURE BIOTECHNOLOGY

DNA sequencing with nanopores

(2012) Grégory F Schneider et al.   NATURE BIOTECHNOLOGY

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision

(2012) Gerald M Cherf et al.   NATURE BIOTECHNOLOGY

Integrated nanopore sensing platform with sub-microsecond temporal resolution

(2012) Jacob K Rosenstein et al.   NATURE METHODS

Nanopores: A journey towards DNA sequencing

(2012) Meni Wanunu   Physics of Life Reviews

Water Bridges in Electropermeabilized Phospholipid Bilayers

(2012) P. Thomas Vernier et al.   PROCEEDINGS OF THE IEEE

DNA confinement in nanochannels: physics and biological applications

(2012) Walter Reisner et al.   REPORTS ON PROGRESS IN PHYSICS

Fabrication of Nanofluidic Biochips with Nanochannels for Applications in DNA Analysis

(2012) Deying Xia et al.   Small

Microfluidic systems for single DNA dynamics

(2012) Danielle J. Mai et al.   Soft Matter

Conformational analysis of single polymer chains in three dimensions by super-resolution fluorescence microscopy

(2012) Hiroyuki Aoki et al.   Soft Matter

Controlling DNA Translocation through Gate Modulation of Nanopore Wall Surface Charges

(2011) Yuhui He et al.   ACS Nano

DNA Separation in Nanowall Array Chips

(2011) Takao Yasui et al.   ANALYTICAL CHEMISTRY

Origins and Consequences of Velocity Fluctuations during DNA Passage through a Nanopore

(2011) Bo Lu et al.   BIOPHYSICAL JOURNAL

Cholesterol implications in plasmid DNA electrotransfer: Evidence for the involvement of endocytotic pathways

(2011) Christelle Rosazza et al.   INTERNATIONAL JOURNAL OF PHARMACEUTICS

Nanochannel confinement: DNA stretch approaching full contour length

(2011) Yoori Kim et al.   LAB ON A CHIP

Homogeneous Shear, Wall Slip, and Shear Banding of Entangled Polymeric Liquids in Simple-Shear Rheometry: A Roadmap of Nonlinear Rheology

(2011) Shi-Qing Wang et al.   MACROMOLECULES

Simulation of DNA Extension in Nanochannels

(2011) Yanwei Wang et al.   MACROMOLECULES

Frictionless Sliding of Single-Stranded DNA in a Carbon Nanotube Pore Observed by Single Molecule Force Spectroscopy

(2011) Valentin Lulevich et al.   NANO LETTERS

Pressure-Driven DNA in Nanogroove Arrays: Complex Dynamics Leads to Length- and Topology-Dependent Separation

(2011) Morten Bo Mikkelsen et al.   NANO LETTERS

Effect of Nanochannel Geometry on DNA Structure in the Presence of Macromolecular Crowding Agent

(2011) Jeremy J. Jones et al.   NANO LETTERS

Nanopore sensors for nucleic acid analysis

(2011) Bala Murali Venkatesan et al.   Nature Nanotechnology

Nanochannel electroporation delivers precise amounts of biomolecules into living cells

(2011) Pouyan E. Boukany et al.   Nature Nanotechnology

Large velocity fluctuations in small-Reynolds-number pipe flow of polymer solutions

(2011) D. Bonn et al.   PHYSICAL REVIEW E

Large Laterally Ordered Nanochannel Arrays from DNA Combing and Imprinting

(2010) Jingjiao Guan et al.   ADVANCED MATERIALS

Nanopillar, nanoball, and nanofibers for highly efficient analysis of biomolecules

(2010) Noritada Kaji et al.   CHEMICAL SOCIETY REVIEWS

DNA manipulation, sorting, and mapping in nanofluidic systems

(2010) Stephen L. Levy et al.   CHEMICAL SOCIETY REVIEWS

DNA in nanochannels—directly visualizing genomic information

(2010) Fredrik Persson et al.   CHEMICAL SOCIETY REVIEWS

Life Cycle of an Electropore: Field-Dependent and Field-Independent Steps in Pore Creation and Annihilation

(2010) Zachary A. Levine et al.   JOURNAL OF MEMBRANE BIOLOGY

Flow pattern and molecular visualization of DNA solutions through a 4:1 planar micro-contraction

(2010) Orin L. Hemminger et al.   JOURNAL OF NON-NEWTONIAN FLUID MECHANICS

Steady-state shear banding in entangled polymers?

(2010) Y. Thomas Hu   JOURNAL OF RHEOLOGY

Soft lithography for micro- and nanoscale patterning

(2010) Dong Qin et al.   Nature Protocols

Mechanical and structural properties of YOYO-1 complexed DNA

(2010) K. Gunther et al.   NUCLEIC ACIDS RESEARCH

Molecular Imaging of Slip in Entangled DNA Solution

(2010) Pouyan E. Boukany et al.   PHYSICAL REVIEW LETTERS

Single-molecule denaturation mapping of DNA in nanofluidic channels

(2010) W. Reisner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single cell analysis: the new frontier in ‘omics’

(2010) Daojing Wang et al.   TRENDS IN BIOTECHNOLOGY

Nanopore analytics: sensing of single molecules

(2009) Stefan Howorka et al.   CHEMICAL SOCIETY REVIEWS

Polymer conformations and hysteretic stresses in nonstationary flows of polymer solutions

(2009) N. François et al.   EPL

Free Solution Hydrodynamic Separation of DNA Fragments from 75 to 106 000 Base Pairs in A Single Run

(2009) Xiayan Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reverse DNA translocation through a solid-state nanopore by magnetic tweezers

(2009) Hongbo Peng et al.   NANOTECHNOLOGY

Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient

(2009) Meni Wanunu et al.   Nature Nanotechnology

Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays

(2009) W. Reisner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Macromolecular crowding induced elongation and compaction of single DNA molecules confined in a nanochannel

(2009) C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nanoscopic Porous Sensors

(2008) John J. Kasianowicz et al.   Annual Review of Analytical Chemistry

DNA Translocation Governed by Interactions with Solid-State Nanopores

(2008) Meni Wanunu et al.   BIOPHYSICAL JOURNAL

A Single-Molecule Nanopore Device Detects DNA Polymerase Activity with Single-Nucleotide Resolution

(2008) Scott L. Cockroft et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Ionic Effects on the Equilibrium Dynamics of DNA Confined in Nanoslits

(2008) Chih-Chen Hsieh et al.   NANO LETTERS

Entropic Unfolding of DNA Molecules in Nanofluidic Channels

(2008) Stephen L. Levy et al.   NANO LETTERS

Scaling theory of DNA confined in nanochannels and nanoslits

(2008) Theo Odijk   PHYSICAL REVIEW E

Drag Enhancement with Polymers

(2008) N. François et al.   PHYSICAL REVIEW LETTERS

Conformation and Dynamics of DNA Confined in Slitlike Nanofluidic Channels

(2008) Douwe Jan Bonthuis et al.   PHYSICAL REVIEW LETTERS

Reynolds number dependence of drag reduction by rodlike polymers

(2008) Yacine Amarouchene et al.   PHYSICS OF FLUIDS