Diffusive dynamics of DNA unzipping in a nanopore

A coarse-grained MARTINI-like force field for DNA unzipping in nanopores

(2015) Anna Stachiewicz et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Quantitative Analysis of the Nanopore Translocation Dynamics of Simple Structured Polynucleotides

(2012) Severin Schink et al.   BIOPHYSICAL JOURNAL

Single-Stranded DNA within Nanopores: Conformational Dynamics and Implications for Sequencing; a Molecular Dynamics Simulation Study

(2012) Andrew T. Guy et al.   BIOPHYSICAL JOURNAL

Characterizing and Controlling the Motion of ssDNA in a Solid-State Nanopore

(2011) Binquan Luan et al.   BIOPHYSICAL JOURNAL

Nanopore sensors for nucleic acid analysis

(2011) Bala Murali Venkatesan et al.   Nature Nanotechnology

Capturing the essence of folding and functions of biomolecules using coarse-grained models

(2011) Changbong Hyeon et al.   Nature Communications

A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics

(2010) Pablo D. Dans et al.   Journal of Chemical Theory and Computation

A mesoscale model of DNA interaction with functionalized nanopore

(2009) Yaling Liu et al.   APPLIED PHYSICS LETTERS

Microscopic Mechanics of Hairpin DNA Translocation through Synthetic Nanopores

(2009) Jeffrey Comer et al.   BIOPHYSICAL JOURNAL

Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient

(2009) Meni Wanunu et al.   Nature Nanotechnology

3D-DART: a DNA structure modelling server

(2009) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

DNA Translocation Governed by Interactions with Solid-State Nanopores

(2008) Meni Wanunu et al.   BIOPHYSICAL JOURNAL

Stretching and unzipping nucleic acid hairpins using a synthetic nanopore

(2008) Q. Zhao et al.   NUCLEIC ACIDS RESEARCH