Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients

Supplementary stocking selects for domesticated genotypes

(2019) Ingerid J. Hagen et al.   Nature Communications

Genomic signatures and correlates of widespread population declines in salmon

(2019) S. J. Lehnert et al.   Nature Communications

De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

(2018) Madeleine Carruthers et al.   BMC GENOMICS

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Comparison of Migratory and Resident Populations of Brown Trout Reveals Candidate Genes for Migration Tendency

(2018) Alexandre Lemopoulos et al.   Genome Biology and Evolution

Genomic signatures of fine-scale local selection in Atlantic salmon suggest involvement of sexual maturation, energy homeostasis and immune defence-related genes

(2018) Victoria L. Pritchard et al.   MOLECULAR ECOLOGY

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

The search for loci under selection: trends, biases and progress

(2018) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

Mechanisms of thermal adaptation and evolutionary potential of conspecific populations to changing environments

(2018) Zhongqi Chen et al.   MOLECULAR ECOLOGY

Evaluation of redundancy analysis to identify signatures of local adaptation

(2018) Thibaut Capblancq et al.   Molecular Ecology Resources

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Salmonid stocking in five North Atlantic jurisdictions: Identifying drivers and barriers to policy change

(2018) Øystein Aas et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

(2017) Sarah P. Flanagan et al.   Evolutionary Applications

Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean

(2017) Sangeet Lamichhaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity

(2017) Maeva Leitwein et al.   G3-Genes Genomes Genetics

Thermal plasticity in farmed, wild and hybrid Atlantic salmon during early development: has domestication caused divergence in low temperature tolerance?

(2016) Monica Favnebøe Solberg et al.   BMC EVOLUTIONARY BIOLOGY

InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change

(2016) Daniel Ayllón et al.   ECOLOGICAL MODELLING

The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes

(2016) R. J. Scott McCairns et al.   Evolutionary Applications

Temporal changes in allele frequencies in a small marble troutSalmo marmoratuspopulation threatened by extreme flood events

(2016) J. M. Pujolar et al.   JOURNAL OF FISH BIOLOGY

Evidence of divergent selection for drought and cold tolerance at landscape and local scales inAbies albaMill. in the French Mediterranean Alps

(2016) Anna M. Roschanski et al.   MOLECULAR ECOLOGY

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Identifying designatable units for intraspecific conservation prioritization: a hierarchical approach applied to the lake whitefish species complex (Coregonusspp.)

(2015) Jonathan A. Mee et al.   Evolutionary Applications

Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

(2015) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Detection of selective sweeps in structured populations: a comparison of recent methods

(2015) Alexandra I. Vatsiou et al.   MOLECULAR ECOLOGY

Evaluation of strategies to conserve and restore intraspecific biodiversity of brown trout: outcomes from genetic monitoring in the French Alps

(2015) J. Gil et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Wild Estonian and Russian sea trout (Salmo trutta) in Finnish coastal sea trout catches: results of genetic mixed-stock analysis

(2015) Marja-Liisa Koljonen et al.   HEREDITAS

The effects of Medieval dams on genetic divergence and demographic history in brown trout populations

(2014) Michael M Hansen et al.   BMC EVOLUTIONARY BIOLOGY

Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes

(2014) Andrew P. Matala et al.   Evolutionary Applications

Plastic and evolutionary responses to climate change in fish

(2014) Lisa G. Crozier et al.   Evolutionary Applications

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Atlantic salmon populations invaded by farmed escapees: quantifying genetic introgression with a Bayesian approach and SNPs

(2013) Kevin Glover et al.   BMC GENETICS

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

(2013) Ian R. Bradbury et al.   Evolutionary Applications

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

(2013) Charles Perrier et al.   MOLECULAR ECOLOGY

A genomic island linked to ecotype divergence in Atlantic cod

(2013) Jakob Hemmer-Hansen et al.   MOLECULAR ECOLOGY

A simulation module in the computer programcolonyfor sibship and parentage analysis

(2013) Jinliang Wang   Molecular Ecology Resources

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic and phenotypic population divergence on a microgeographic scale in brown trout

(2012) RIKE B. STELKENS et al.   MOLECULAR ECOLOGY

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci

(2011) K Meier et al.   HEREDITY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Assessment of three strategies practiced by fishery managers for restoring native brown trout (Salmo trutta) populations in Northern French Alpine Streams

(2010) Arnaud Caudron et al.   ECOLOGY OF FRESHWATER FISH

Phylogeographic structure of brown troutSalmo truttain Britain and Ireland: glacial refugia, postglacial colonization and origins of sympatric populations

(2010) N. J. McKeown et al.   JOURNAL OF FISH BIOLOGY

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals

(2010) Linda Laikre et al.   TRENDS IN ECOLOGY & EVOLUTION

Correcting for ascertainment bias in the inference of population structure

(2009) Gilles Guillot et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Northern and Southern expansions of Atlantic brown trout (Salmo trutta) populations during the Pleistocene

(2009) MARTÍ CORTEY et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A case of isolation by distance and short-term temporal stability of population structure in brown trout (Salmo trutta) within the River Dart, southwest England

(2009) Andrew M. Griffiths et al.   Evolutionary Applications

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Genetic variation in Scandinavian brown trout (Salmo trutta L.): evidence of distinct sympatric populations

(2009) F. ALLENDORF et al.   HEREDITAS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines

(2009) MICHAEL M. HANSEN et al.   MOLECULAR ECOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Local adaptation in brown trout early life-history traits: implications for climate change adaptability

(2008) L. F. Jensen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment

(2003) Siri Østergaard et al.   MOLECULAR ECOLOGY