At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

(2019) Emmanuelle Morin et al.   NEW PHYTOLOGIST

The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi

(2018) Yuuki Kobayashi et al.   BMC GENOMICS

The virome of the arbuscular mycorrhizal fungus Gigaspora margarita reveals the first report of DNA fragments corresponding to replicating non-retroviral RNA viruses in fungi

(2018) Massimo Turina et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial island biogeography: isolation shapes the life history characteristics but not diversity of root-symbiotic fungal communities

(2018) John Davison et al.   ISME Journal

Metabolome changes are induced in the arbuscular mycorrhizal fungus Gigaspora margarita by germination and by its bacterial endosymbiont

(2018) Stephen P. Dearth et al.   MYCORRHIZA

The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics

(2018) Christine Strullu-Derrien et al.   NEW PHYTOLOGIST

How do arbuscular mycorrhizal fungi handle phosphate? New insight into fine-tuning of phosphate metabolism

(2018) Tatsuhiro Ezawa et al.   NEW PHYTOLOGIST

Partner communication and role of nutrients in the arbuscular mycorrhizal symbiosis

(2018) Luisa Lanfranco et al.   NEW PHYTOLOGIST

Native soils with their microbiotas elicit a state of alert in tomato plants

(2018) Matteo Chialva et al.   NEW PHYTOLOGIST

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

(2018) Eric C. H. Chen et al.   NEW PHYTOLOGIST

Transcriptional Regulation of Arbuscular Mycorrhiza Development

(2018) Priya Pimprikar et al.   PLANT AND CELL PHYSIOLOGY

NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi

(2018) Jens Heller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why is a functional PHO pathway required by fungal pathogens to disseminate within a phosphate-rich host: A paradox explained by alkaline pH-simulated nutrient deprivation and expanded PHO pathway function

(2018) Sophie Lev et al.   PLoS Pathogens

Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis

(2018) Meng Li et al.   Frontiers in Plant Science

Genome Size Diversity and Its Impact on the Evolution of Land Plants

(2018) et al.   Genes

Biology of Fungi and Their Bacterial Endosymbionts

(2018) Teresa E. Pawlowska et al.   Annual Review of Phytopathology

Biogeography of arbuscular mycorrhizal fungi (Glomeromycota): a phylogenetic perspective on species distribution patterns

(2018) Sidney L. Stürmer et al.   MYCORRHIZA

The future has roots in the past: the ideas and scientists that shaped mycorrhizal research

(2018) Paola Bonfante   NEW PHYTOLOGIST

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

(2018) Ying Chang et al.   NEW PHYTOLOGIST

Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme ) and its bacterial endosymbionts

(2018) Xuepeng Sun et al.   NEW PHYTOLOGIST

Leveraging single-cell genomics to expand the fungal tree of life

(2018) Steven R. Ahrendt et al.   Nature Microbiology

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

(2017) J. Uehling et al.   ENVIRONMENTAL MICROBIOLOGY

Cut-and-Paste Transposons in Fungi with Diverse Lifestyles

(2017) Anna Muszewska et al.   Genome Biology and Evolution

Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota

(2017) Paola Bonfante et al.   ISME Journal

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant signalling in symbiosis and immunity

(2017) Cyril Zipfel et al.   NATURE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

The rice LysM receptor-like kinase Os CERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling

(2017) Gennaro Carotenuto et al.   NEW PHYTOLOGIST

Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis

(2017) Allyson M. MacLean et al.   PLANT CELL

Evidence that Austropuccinia psidii may complete its sexual life cycle on Myrtaceae

(2017) A. R. McTaggart et al.   PLANT PATHOLOGY

Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi

(2017) Stephen J. Mondo et al.   Nature Communications

Structure and function of a broad-specificity chitin deacetylase from Aspergillus nidulans FGSC A4

(2017) Zhanliang Liu et al.   Scientific Reports

The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens

(2016) Andrea Sánchez-Vallet et al.   Annual Review of Phytopathology

Recombination-independent recognition of DNA homology for repeat-induced point mutation

(2016) Eugene Gladyshev et al.   CURRENT GENETICS

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

(2016) Alison C. Testa et al.   Genome Biology and Evolution

Arbuscular Mycorrhizal Symbiosis Requires a Phosphate Transceptor in the Gigaspora margarita Fungal Symbiont

(2016) Xianan Xie et al.   Molecular Plant

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

An interdomain network: the endobacterium of a mycorrhizal fungus promotes antioxidative responses in both fungal and plant hosts

(2016) Candida Vannini et al.   NEW PHYTOLOGIST

Recognizing Plant Defense Priming

(2016) Ainhoa Martinez-Medina et al.   TRENDS IN PLANT SCIENCE

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

(2016) Raúl Castanera et al.   PLoS Genetics

Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

(2016) Jeanne Ropars et al.   Nature Microbiology

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

Diverse bacterial communities are recruited on spores of different arbuscular mycorrhizal fungal isolates

(2015) Monica Agnolucci et al.   BIOLOGY AND FERTILITY OF SOILS

Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

(2015) Joëlle Amselem et al.   BMC GENOMICS

Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential

(2015) Alessandra Salvioli et al.   ISME Journal

Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association

(2015) Gloria Torres-Cortés et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimal genomes of mycoplasma-related endobacteria are plastic and contain host-derived genes for sustained life within Glomeromycota

(2015) Mizue Naito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Algal ancestor of land plants was preadapted for symbiosis

(2015) Pierre-Marc Delaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Early Lotus japonicus root transcriptomic responses to symbiotic and pathogenic fungal exudates

(2015) Marco Giovannetti et al.   Frontiers in Plant Science

Structure and function of Toll/interleukin-1 receptor/resistance protein (TIR) domains

(2014) Thomas Ve et al.   APOPTOSIS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi

(2014) Raúl Castanera et al.   BMC GENOMICS

Diversity and Variability of NOD-Like Receptors in Fungi

(2014) Witold Dyrka et al.   Genome Biology and Evolution

Signaling events during initiation of arbuscular mycorrhizal symbiosis

(2014) Alexa M. Schmitz et al.   Journal of Integrative Plant Biology

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

The Bifunctional Plant Receptor, OsCERK1, Regulates Both Chitin-Triggered Immunity and Arbuscular Mycorrhizal Symbiosis in Rice

(2014) Kana Miyata et al.   PLANT AND CELL PHYSIOLOGY

The receptor kinaseCERK1has dual functions in symbiosis and immunity signalling

(2014) Xiaowei Zhang et al.   PLANT JOURNAL

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

(2014) Kui Lin et al.   PLoS Genetics

Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi

(2013) Alessandro Desirò et al.   ISME Journal

Short-chain chitin oligomers from arbuscular mycorrhizal fungi trigger nuclear Ca2+spiking inMedicago truncatularoots and their production is enhanced by strigolactone

(2013) Andrea Genre et al.   NEW PHYTOLOGIST

Infection Structure-Specific Expression of  -1,3-Glucan Synthase Is Essential for Pathogenicity of Colletotrichum graminicola and Evasion of  -Glucan-Triggered Immunity in Maize

(2013) E. Oliveira-Garcia et al.   PLANT CELL

The expression of GintPT, the phosphate transporter of Rhizophagus irregularis, depends on the symbiotic status and phosphate availability

(2013) Valentina Fiorilli et al.   PLANTA

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High phosphate reduces host ability to develop arbuscular mycorrhizal symbiosis without affecting root calcium spiking responses to the fungus

(2013) Coline Balzergue et al.   Frontiers in Plant Science

Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation

(2012) Aitor Hernández-Ortega et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

EVOLUTIONARY STABILITY IN A 400-MILLION-YEAR-OLD HERITABLE FACULTATIVE MUTUALISM

(2012) Stephen J. Mondo et al.   EVOLUTION

Phosphate homeostasis in the yeastSaccharomyces cerevisiae, the key role of the SPX domain-containing proteins

(2012) David Secco et al.   FEBS LETTERS

The mitochondrial genome of the arbuscular mycorrhizal fungusGigaspora margaritareveals two unsuspectedtrans-splicing events of group I introns

(2012) Adrian Pelin et al.   NEW PHYTOLOGIST

Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome

(2011) Gerald Lackner et al.   BMC GENOMICS

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy

(2011) Silke Kloppholz et al.   CURRENT BIOLOGY

Multiple Multi-Copper Oxidase Gene Families in Basidiomycetes – What for?

(2011) Ursula Kues et al.   CURRENT GENOMICS

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

(2011) Stefano Ghignone et al.   ISME Journal

Estimation of the Glomus intraradices nuclear DNA content

(2011) Kinga A. Sędzielewska et al.   NEW PHYTOLOGIST

Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level

(2011) Manuela Krüger et al.   NEW PHYTOLOGIST

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

Interkingdom Gene Transfer of a Hybrid NPS/PKS from Bacteria to Filamentous Ascomycota

(2011) Daniel P. Lawrence et al.   PLoS One

The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes

(2010) Maria Naumann et al.   ISME Journal

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

Fungal LysM effectors: extinguishers of host immunity?

(2009) Ronnie de Jonge et al.   TRENDS IN MICROBIOLOGY

Application of Laser Microdissection to plant pathogenic and symbiotic interactions

(2009) Raffaella Balestrini et al.   Journal of Plant Interactions

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

(2008) James K Hane et al.   BMC BIOINFORMATICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH