Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes

Genome-centric view of carbon processing in thawing permafrost

(2018) Ben J. Woodcroft et al.   NATURE

Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community

(2016) Jinu Eo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

Temperature mediates continental-scale diversity of microbes in forest soils

(2016) Jizhong Zhou et al.   Nature Communications

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

(2016) C. Ryan Penton et al.   Frontiers in Microbiology

Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

(2016) Eric R. Johnston et al.   Frontiers in Microbiology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Erratum: Erratum: Phylogenetic and functional potential links pH and N2O emissions in pasture soils

(2016) Md Sainur Samad et al.   Scientific Reports

Fewer new species colonize at low frequency N addition in a temperate grassland

(2015) Yunhai Zhang et al.   FUNCTIONAL ECOLOGY

Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes

(2015) Ximei Zhang et al.   GLOBAL CHANGE BIOLOGY

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of soil acidification reducing bacterial diversity

(2015) Ximei Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

(2015) Stephen Nayfach et al.   GENOME BIOLOGY

Bacterial Targets as Potential Indicators of Diesel Fuel Toxicity in Subantarctic Soils

(2014) Josie van Dorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Water addition regulates the metabolic activity of ammonia oxidizers responding to environmental perturbations in dry subhumid ecosystems

(2014) Hang-Wei Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Are there links between responses of soil microbes and ecosystem functioning to elevated CO2, N deposition and warming? A global perspective

(2014) Pablo García-Palacios et al.   GLOBAL CHANGE BIOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning

(2014) Sascha Krause et al.   Frontiers in Microbiology

Response of the Abundance of Key Soil Microbial Nitrogen-Cycling Genes to Multi-Factorial Global Changes

(2013) Ximei Zhang et al.   PLoS One

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Light and Heavy Fractions of Soil Organic Matter in Response to Climate Warming and Increased Precipitation in a Temperate Steppe

(2012) Bing Song et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Plant community responses to nitrogen addition and increased precipitation: the importance of water availability and species traits

(2011) HAIJUN YANG et al.   GLOBAL CHANGE BIOLOGY

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Linking stoichiometric homoeostasis with ecosystem structure, functioning and stability

(2010) Qiang Yu et al.   ECOLOGY LETTERS

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships

(2010) U. N. Nielsen et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Water-use efficiency in response to climate change: from leaf to ecosystem in a temperate steppe

(2010) SHULI NIU et al.   GLOBAL CHANGE BIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Responses of ecosystem nitrogen cycle to nitrogen addition: a meta-analysis

(2010) Meng Lu et al.   NEW PHYTOLOGIST

Tradeoffs and thresholds in the effects of nitrogen addition on biodiversity and ecosystem functioning: evidence from inner Mongolia Grasslands

(2009) YONGFEI BAI et al.   GLOBAL CHANGE BIOLOGY

Comparative systems biology across an evolutionary gradient within the Shewanella genus

(2009) K. T. Konstantinidis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A projection of future changes in summer precipitation and monsoon in East Asia

(2009) Ying Sun et al.   Science China-Earth Sciences

Predominant role of water in regulating soil and microbial respiration and their responses to climate change in a semiarid grassland

(2008) WEIXING LIU et al.   GLOBAL CHANGE BIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE